miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 126626 0.66 0.985223
Target:  5'- aCGGcgauGGACGgucGGGUGAcgCGCAGCa -3'
miRNA:   3'- aGUCuacuCCUGC---UCCGCUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 126435 0.66 0.977181
Target:  5'- cCAGGcggucGAGGAUGAGGaagaGAaacaGCAGCg -3'
miRNA:   3'- aGUCUa----CUCCUGCUCCg---CUag--CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 123436 0.68 0.956053
Target:  5'- gCGGGauAGGACgGAGGCGc-CGUAGCg -3'
miRNA:   3'- aGUCUacUCCUG-CUCCGCuaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 123359 0.7 0.907505
Target:  5'- cCGGGUGuGGAgGAGGCGG-CGgGGg -3'
miRNA:   3'- aGUCUACuCCUgCUCCGCUaGCgUCg -5'
14210 3' -54.4 NC_003521.1 + 123221 0.76 0.620982
Target:  5'- -aGGAcGGGGGCGgcgguAGGUGGUCGUAGCg -3'
miRNA:   3'- agUCUaCUCCUGC-----UCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 122707 0.69 0.924454
Target:  5'- cUCGGc--GGGGCugGAGGCGGUCGUGGUc -3'
miRNA:   3'- -AGUCuacUCCUG--CUCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 121302 0.66 0.985223
Target:  5'- gCAGAUGAGGcCGAaGUGuUCGUGGg -3'
miRNA:   3'- aGUCUACUCCuGCUcCGCuAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 120955 0.73 0.758243
Target:  5'- -aGGGgcaGGGGGCGGGGCGGUuUGCGGUc -3'
miRNA:   3'- agUCUa--CUCCUGCUCCGCUA-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 120357 0.68 0.956053
Target:  5'- uUCGGAcgaagGAGGACGggaaGGGgGAUCgGgAGCg -3'
miRNA:   3'- -AGUCUa----CUCCUGC----UCCgCUAG-CgUCG- -5'
14210 3' -54.4 NC_003521.1 + 119520 0.66 0.97944
Target:  5'- gUCAGGUGcGGGuACGGGuuGugcCGCAGCa -3'
miRNA:   3'- -AGUCUAC-UCC-UGCUCcgCua-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 119312 0.72 0.785735
Target:  5'- cCAGGUGAGG-CGGauGGUGAUgCGCAcGCg -3'
miRNA:   3'- aGUCUACUCCuGCU--CCGCUA-GCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 119033 0.68 0.948146
Target:  5'- uUCGGAU-AGGGCG-GGCGGcgUCGgGGUg -3'
miRNA:   3'- -AGUCUAcUCCUGCuCCGCU--AGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 118698 0.66 0.981528
Target:  5'- gCuGGUgGAGGGCaggcucauGGGCGAggggCGCGGCa -3'
miRNA:   3'- aGuCUA-CUCCUGc-------UCCGCUa---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 117939 0.74 0.710406
Target:  5'- aCGGggGAGGAgGAGaGCaucAUCGCGGCg -3'
miRNA:   3'- aGUCuaCUCCUgCUC-CGc--UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 115928 0.67 0.963098
Target:  5'- -gAGGUGAGGccaguacgguUGGGGCGucUUGCGGCu -3'
miRNA:   3'- agUCUACUCCu---------GCUCCGCu-AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 110183 0.66 0.981528
Target:  5'- aCAGGagguUGGGGugGAGGC---CGCuGGCg -3'
miRNA:   3'- aGUCU----ACUCCugCUCCGcuaGCG-UCG- -5'
14210 3' -54.4 NC_003521.1 + 109357 0.68 0.956053
Target:  5'- gCAGGagGccGACGAGGcCGAgagCGCGGCc -3'
miRNA:   3'- aGUCUa-CucCUGCUCC-GCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 107243 0.69 0.924454
Target:  5'- gUAGAUGGuGGACGGGGUuuGAUUGU-GCg -3'
miRNA:   3'- aGUCUACU-CCUGCUCCG--CUAGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 104443 0.7 0.895079
Target:  5'- gCGGccGAGGugGAGuGUaggaaGUCGCAGCg -3'
miRNA:   3'- aGUCuaCUCCugCUC-CGc----UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 102964 0.66 0.983454
Target:  5'- cUCGGGcgucGGGGcucugGCGGGGCGGcccagcCGCGGCg -3'
miRNA:   3'- -AGUCUa---CUCC-----UGCUCCGCUa-----GCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.