miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 178228 0.69 0.919032
Target:  5'- gCAGuucccgGGGGGgGuAGGCGAuguucaccaucUCGCAGCa -3'
miRNA:   3'- aGUCua----CUCCUgC-UCCGCU-----------AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 131096 0.69 0.913382
Target:  5'- gCGGGcuccgGAcGGCGGGGCGG-CGCGGCu -3'
miRNA:   3'- aGUCUa----CUcCUGCUCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 239082 0.7 0.888536
Target:  5'- -uGGcUGAGGACGAGGC-AUCGUucccGGUa -3'
miRNA:   3'- agUCuACUCCUGCUCCGcUAGCG----UCG- -5'
14210 3' -54.4 NC_003521.1 + 46071 0.7 0.895079
Target:  5'- -gGGAUGAGGucGCGAcgcccGGCG-UCGCAGa -3'
miRNA:   3'- agUCUACUCC--UGCU-----CCGCuAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 104443 0.7 0.895079
Target:  5'- gCGGccGAGGugGAGuGUaggaaGUCGCAGCg -3'
miRNA:   3'- aGUCuaCUCCugCUC-CGc----UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 43627 0.7 0.901403
Target:  5'- -----cGAGGACGAGGaGGagGCGGCg -3'
miRNA:   3'- agucuaCUCCUGCUCCgCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 87570 0.7 0.907505
Target:  5'- -uGGAUGAcGGGC-AGGCGGgugCGCAcGCg -3'
miRNA:   3'- agUCUACU-CCUGcUCCGCUa--GCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 224015 0.7 0.907505
Target:  5'- gCAGcgGcGGGCccGGCGGUCGgGGCg -3'
miRNA:   3'- aGUCuaCuCCUGcuCCGCUAGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 101974 0.7 0.907505
Target:  5'- -gAGAUGGGGuccaGcAGGCGGU-GCAGCu -3'
miRNA:   3'- agUCUACUCCug--C-UCCGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 216739 0.7 0.907505
Target:  5'- gCGGAgaGGGGAUGAGGCGA-CG-GGCu -3'
miRNA:   3'- aGUCUa-CUCCUGCUCCGCUaGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 91866 0.69 0.913382
Target:  5'- gCGGAccAGGACGGcGGCGG-CGguGCg -3'
miRNA:   3'- aGUCUacUCCUGCU-CCGCUaGCguCG- -5'
14210 3' -54.4 NC_003521.1 + 11167 0.69 0.913382
Target:  5'- gCAGccGAGGAUGAucccGGUGAg-GCAGCa -3'
miRNA:   3'- aGUCuaCUCCUGCU----CCGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 186772 0.75 0.680872
Target:  5'- aUCGGcgGAGG-CGGcGGUGGUgGCGGCg -3'
miRNA:   3'- -AGUCuaCUCCuGCU-CCGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 123221 0.76 0.620982
Target:  5'- -aGGAcGGGGGCGgcgguAGGUGGUCGUAGCg -3'
miRNA:   3'- agUCUaCUCCUGC-----UCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 102930 0.77 0.571216
Target:  5'- aCGGuuUGAGGGcCGAGGCG-UCGCGGUc -3'
miRNA:   3'- aGUCu-ACUCCU-GCUCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 178054 0.78 0.484657
Target:  5'- gUCAGGcuggUGGGGACGGGaaggucgaggucGCGGUCGCGGUa -3'
miRNA:   3'- -AGUCU----ACUCCUGCUC------------CGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 91998 0.79 0.466246
Target:  5'- cUCGGccGAGGGC-AGGCGGUCGCcGCg -3'
miRNA:   3'- -AGUCuaCUCCUGcUCCGCUAGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 18886 0.79 0.448205
Target:  5'- gCAGcgacGAGGACGAGGCGc-CGCGGCa -3'
miRNA:   3'- aGUCua--CUCCUGCUCCGCuaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 216901 0.81 0.341296
Target:  5'- gCAGGUGAGGA-GGGcGCGGUgGCAGCg -3'
miRNA:   3'- aGUCUACUCCUgCUC-CGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 126626 0.66 0.985223
Target:  5'- aCGGcgauGGACGgucGGGUGAcgCGCAGCa -3'
miRNA:   3'- aGUCuacuCCUGC---UCCGCUa-GCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.