Results 41 - 60 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 17233 | 0.7 | 0.907505 |
Target: 5'- cUCGGAggccGAGGugGAGGCG--CGCcGUa -3' miRNA: 3'- -AGUCUa---CUCCugCUCCGCuaGCGuCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 179728 | 0.71 | 0.844896 |
Target: 5'- cUCAGcugcgaGAGGAUGAcGGCGAUCucCAGCg -3' miRNA: 3'- -AGUCua----CUCCUGCU-CCGCUAGc-GUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 18886 | 0.79 | 0.448205 |
Target: 5'- gCAGcgacGAGGACGAGGCGc-CGCGGCa -3' miRNA: 3'- aGUCua--CUCCUGCUCCGCuaGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 165245 | 0.7 | 0.901403 |
Target: 5'- gCGGAagagGAGGACGAGGacaggaGggCGCuGGCg -3' miRNA: 3'- aGUCUa---CUCCUGCUCCg-----CuaGCG-UCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 216901 | 0.81 | 0.341296 |
Target: 5'- gCAGGUGAGGA-GGGcGCGGUgGCAGCg -3' miRNA: 3'- aGUCUACUCCUgCUC-CGCUAgCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 136976 | 0.68 | 0.94386 |
Target: 5'- cCAGccu-GGACGAGGCcGAgaCGCGGCc -3' miRNA: 3'- aGUCuacuCCUGCUCCG-CUa-GCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 178054 | 0.78 | 0.484657 |
Target: 5'- gUCAGGcuggUGGGGACGGGaaggucgaggucGCGGUCGCGGUa -3' miRNA: 3'- -AGUCU----ACUCCUGCUC------------CGCUAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 172306 | 0.68 | 0.93935 |
Target: 5'- gUCcGGUGucGGugGcgccAGGcCGGUCGCGGCg -3' miRNA: 3'- -AGuCUACu-CCugC----UCC-GCUAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 84252 | 0.69 | 0.934612 |
Target: 5'- -gGGGUGGauGCGAuGGCGGUCGCugGGCa -3' miRNA: 3'- agUCUACUccUGCU-CCGCUAGCG--UCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 37523 | 0.69 | 0.929648 |
Target: 5'- aUCAGcgacguccugGGGGugGGcagcGGgGGUCGCGGCg -3' miRNA: 3'- -AGUCua--------CUCCugCU----CCgCUAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 40222 | 0.69 | 0.924454 |
Target: 5'- cCGcGUGAGG-CGGGcaGCGGUCGCAGg -3' miRNA: 3'- aGUcUACUCCuGCUC--CGCUAGCGUCg -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 76314 | 0.69 | 0.913382 |
Target: 5'- gCAGcgGAGGugGcGGCGAcaGCuGCg -3' miRNA: 3'- aGUCuaCUCCugCuCCGCUagCGuCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 98461 | 0.7 | 0.907505 |
Target: 5'- gUUGGAgGAGG-CGGcGGCGGcCGCGGCg -3' miRNA: 3'- -AGUCUaCUCCuGCU-CCGCUaGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 170298 | 0.7 | 0.893139 |
Target: 5'- cCGGccGAGcGCGAGGCGGUCacgucgguguuuaaGCGGCu -3' miRNA: 3'- aGUCuaCUCcUGCUCCGCUAG--------------CGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 38855 | 0.7 | 0.888536 |
Target: 5'- -uGGcUGAGGACGAGGC-AUCGUucccGGUa -3' miRNA: 3'- agUCuACUCCUGCUCCGcUAGCG----UCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 93900 | 0.71 | 0.867625 |
Target: 5'- -gAGGgcauGGGCGuGGCuGGUCGCGGCa -3' miRNA: 3'- agUCUacu-CCUGCuCCG-CUAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 217166 | 0.71 | 0.859495 |
Target: 5'- gCAGAUGAGaAUGAGgaauaccGCGAUCGUGGUg -3' miRNA: 3'- aGUCUACUCcUGCUC-------CGCUAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 85861 | 0.72 | 0.82881 |
Target: 5'- gCAGAUGAugcaGGGCaccAGGCGcUCGCGGUa -3' miRNA: 3'- aGUCUACU----CCUGc--UCCGCuAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 77701 | 0.72 | 0.785735 |
Target: 5'- aCAGAUgcccGAGGagGCGGcGGUGGUCGUGGCg -3' miRNA: 3'- aGUCUA----CUCC--UGCU-CCGCUAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 186772 | 0.75 | 0.680872 |
Target: 5'- aUCGGcgGAGG-CGGcGGUGGUgGCGGCg -3' miRNA: 3'- -AGUCuaCUCCuGCU-CCGCUAgCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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