miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 98461 0.7 0.907505
Target:  5'- gUUGGAgGAGG-CGGcGGCGGcCGCGGCg -3'
miRNA:   3'- -AGUCUaCUCCuGCU-CCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 93482 0.69 0.919032
Target:  5'- aUCGGAcGAGGACGAagaguccgagGGCGccuagcgcGUCGUGGUg -3'
miRNA:   3'- -AGUCUaCUCCUGCU----------CCGC--------UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 102930 0.77 0.571216
Target:  5'- aCGGuuUGAGGGcCGAGGCG-UCGCGGUc -3'
miRNA:   3'- aGUCu-ACUCCU-GCUCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 167411 0.73 0.758243
Target:  5'- gCAGGUcGGGGAaGuGGCGG-CGCAGCa -3'
miRNA:   3'- aGUCUA-CUCCUgCuCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 93982 0.72 0.806885
Target:  5'- gCGGAggcGAGGACGAGGCGccccccagacaggCGgAGCg -3'
miRNA:   3'- aGUCUa--CUCCUGCUCCGCua-----------GCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 37329 0.72 0.82881
Target:  5'- ------uGGGugGGGGCGGUCGCGGa -3'
miRNA:   3'- agucuacUCCugCUCCGCUAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 91741 0.71 0.860244
Target:  5'- gUAGAggcUGAGGGCGu-GCGAgagCGCGGCc -3'
miRNA:   3'- aGUCU---ACUCCUGCucCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 49667 0.7 0.874804
Target:  5'- -uGGAgaGGGGCcGGGCGAgCGCGGCg -3'
miRNA:   3'- agUCUacUCCUGcUCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 178303 0.7 0.888536
Target:  5'- -aAGAUGAGGuccuGCGGGGUGAugaUCaCGGCg -3'
miRNA:   3'- agUCUACUCC----UGCUCCGCU---AGcGUCG- -5'
14210 3' -54.4 NC_003521.1 + 73522 0.7 0.895079
Target:  5'- aUguGGUGGGcGACGAGGauccGUCGCAGa -3'
miRNA:   3'- -AguCUACUC-CUGCUCCgc--UAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 126435 0.66 0.977181
Target:  5'- cCAGGcggucGAGGAUGAGGaagaGAaacaGCAGCg -3'
miRNA:   3'- aGUCUa----CUCCUGCUCCg---CUag--CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 195363 0.67 0.971852
Target:  5'- cCGGGUgaaggugacgcccGAGGACGAGGCGcccguaccguaAUCGgaGGCc -3'
miRNA:   3'- aGUCUA-------------CUCCUGCUCCGC-----------UAGCg-UCG- -5'
14210 3' -54.4 NC_003521.1 + 38238 0.69 0.929648
Target:  5'- cUCGGc---GGGCGGGGCGGagaCGCGGCc -3'
miRNA:   3'- -AGUCuacuCCUGCUCCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 222047 0.69 0.929648
Target:  5'- aUCGGcgGGGGGCaccaGCcGUCGCAGCa -3'
miRNA:   3'- -AGUCuaCUCCUGcuc-CGcUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 172306 0.68 0.93935
Target:  5'- gUCcGGUGucGGugGcgccAGGcCGGUCGCGGCg -3'
miRNA:   3'- -AGuCUACu-CCugC----UCC-GCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 136976 0.68 0.94386
Target:  5'- cCAGccu-GGACGAGGCcGAgaCGCGGCc -3'
miRNA:   3'- aGUCuacuCCUGCUCCG-CUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 56029 0.68 0.950611
Target:  5'- -gAGGUGAGGAUggGAGGgGAaugcugcccgaagUGCAGCg -3'
miRNA:   3'- agUCUACUCCUG--CUCCgCUa------------GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 29643 0.68 0.956053
Target:  5'- -----aGAGGACGAGacCGAgCGCGGCg -3'
miRNA:   3'- agucuaCUCCUGCUCc-GCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 31451 0.67 0.963098
Target:  5'- aCGGG-GAGGACGAcuaugaGGgGuucagcUCGCAGCg -3'
miRNA:   3'- aGUCUaCUCCUGCU------CCgCu-----AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 157029 0.67 0.969314
Target:  5'- gCAGGUuucGGGGGCGcGGUcgGAggagCGCGGCg -3'
miRNA:   3'- aGUCUA---CUCCUGCuCCG--CUa---GCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.