miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 136029 0.68 0.93935
Target:  5'- aUCAGc-GAGGugGcGGUGAUCGaggGGCa -3'
miRNA:   3'- -AGUCuaCUCCugCuCCGCUAGCg--UCG- -5'
14210 3' -54.4 NC_003521.1 + 94376 0.68 0.94386
Target:  5'- cUCGGAcGAGGAggugUGGGGCauguuAUCGUAGCc -3'
miRNA:   3'- -AGUCUaCUCCU----GCUCCGc----UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 56029 0.68 0.950611
Target:  5'- -gAGGUGAGGAUggGAGGgGAaugcugcccgaagUGCAGCg -3'
miRNA:   3'- agUCUACUCCUG--CUCCgCUa------------GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 29643 0.68 0.956053
Target:  5'- -----aGAGGACGAGacCGAgCGCGGCg -3'
miRNA:   3'- agucuaCUCCUGCUCc-GCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 190524 0.68 0.959681
Target:  5'- -uGGcUGAGGAgCGAGGUGcggCgGCAGCa -3'
miRNA:   3'- agUCuACUCCU-GCUCCGCua-G-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 169612 0.67 0.966307
Target:  5'- gCGGuuguaGGGGACGAGGCGGaUGCGa- -3'
miRNA:   3'- aGUCua---CUCCUGCUCCGCUaGCGUcg -5'
14210 3' -54.4 NC_003521.1 + 66906 0.67 0.971578
Target:  5'- gCAGAUGAGGGgGAGGaaagccaaGCAGa -3'
miRNA:   3'- aGUCUACUCCUgCUCCgcuag---CGUCg -5'
14210 3' -54.4 NC_003521.1 + 195363 0.67 0.971852
Target:  5'- cCGGGUgaaggugacgcccGAGGACGAGGCGcccguaccguaAUCGgaGGCc -3'
miRNA:   3'- aGUCUA-------------CUCCUGCUCCGC-----------UAGCg-UCG- -5'
14210 3' -54.4 NC_003521.1 + 123359 0.7 0.907505
Target:  5'- cCGGGUGuGGAgGAGGCGG-CGgGGg -3'
miRNA:   3'- aGUCUACuCCUgCUCCGCUaGCgUCg -5'
14210 3' -54.4 NC_003521.1 + 36976 0.66 0.983268
Target:  5'- gCGGGUGcucGGcGGCGAcauccgcgacgagGGCG-UCGCGGCg -3'
miRNA:   3'- aGUCUAC---UC-CUGCU-------------CCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 98226 0.66 0.983454
Target:  5'- gCGGcGUGGGaGGCgggGAGGCGGggGCGGCc -3'
miRNA:   3'- aGUC-UACUC-CUG---CUCCGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 75156 0.66 0.985223
Target:  5'- -gGGAUGccuGGACGcauGGUGccagCGCGGCg -3'
miRNA:   3'- agUCUACu--CCUGCu--CCGCua--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 126626 0.66 0.985223
Target:  5'- aCGGcgauGGACGgucGGGUGAcgCGCAGCa -3'
miRNA:   3'- aGUCuacuCCUGC---UCCGCUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 85861 0.72 0.82881
Target:  5'- gCAGAUGAugcaGGGCaccAGGCGcUCGCGGUa -3'
miRNA:   3'- aGUCUACU----CCUGc--UCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 179728 0.71 0.844896
Target:  5'- cUCAGcugcgaGAGGAUGAcGGCGAUCucCAGCg -3'
miRNA:   3'- -AGUCua----CUCCUGCU-CCGCUAGc-GUCG- -5'
14210 3' -54.4 NC_003521.1 + 167556 0.71 0.867625
Target:  5'- gCAGAUGcuGAUGAuGGCGcagagGUUGCAGCg -3'
miRNA:   3'- aGUCUACucCUGCU-CCGC-----UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 7725 0.7 0.874804
Target:  5'- uUUGGGUGGGGAgGGcGGCGcgaGCGGCg -3'
miRNA:   3'- -AGUCUACUCCUgCU-CCGCuagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 170298 0.7 0.893139
Target:  5'- cCGGccGAGcGCGAGGCGGUCacgucgguguuuaaGCGGCu -3'
miRNA:   3'- aGUCuaCUCcUGCUCCGCUAG--------------CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 165245 0.7 0.901403
Target:  5'- gCGGAagagGAGGACGAGGacaggaGggCGCuGGCg -3'
miRNA:   3'- aGUCUa---CUCCUGCUCCg-----CuaGCG-UCG- -5'
14210 3' -54.4 NC_003521.1 + 35784 0.67 0.969022
Target:  5'- gCAGAc--GGACGAaacggauccaucgGGCG-UCGCGGCa -3'
miRNA:   3'- aGUCUacuCCUGCU-------------CCGCuAGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.