miRNA display CGI


Results 101 - 120 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 115928 0.67 0.963098
Target:  5'- -gAGGUGAGGccaguacgguUGGGGCGucUUGCGGCu -3'
miRNA:   3'- agUCUACUCCu---------GCUCCGCu-AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 163735 0.67 0.963098
Target:  5'- -gGGAUGAGcGGCGccGGCGGcaacaGCGGCg -3'
miRNA:   3'- agUCUACUC-CUGCu-CCGCUag---CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 71972 0.67 0.963098
Target:  5'- gCAGAUGAGcccGGCGuccGUGAcgCGCAGCu -3'
miRNA:   3'- aGUCUACUC---CUGCuc-CGCUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 117939 0.74 0.710406
Target:  5'- aCGGggGAGGAgGAGaGCaucAUCGCGGCg -3'
miRNA:   3'- aGUCuaCUCCUgCUC-CGc--UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 98462 0.67 0.969314
Target:  5'- -----aGAGGAgGAGGUaGUCGUAGUg -3'
miRNA:   3'- agucuaCUCCUgCUCCGcUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 35784 0.67 0.969022
Target:  5'- gCAGAc--GGACGAaacggauccaucgGGCG-UCGCGGCa -3'
miRNA:   3'- aGUCUacuCCUGCU-------------CCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 193280 0.67 0.963098
Target:  5'- gCGGGUGccGGGACG-GGCG-UCGgAGUc -3'
miRNA:   3'- aGUCUAC--UCCUGCuCCGCuAGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 133418 0.67 0.965995
Target:  5'- cUCAGGaacuacaUGuuuuGGAUGGGGCGccguUCGCAGg -3'
miRNA:   3'- -AGUCU-------ACu---CCUGCUCCGCu---AGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 88317 0.68 0.959681
Target:  5'- --cGAUGAGGAUGcGGGUcucgccGAagCGCAGCg -3'
miRNA:   3'- aguCUACUCCUGC-UCCG------CUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 87378 0.73 0.758243
Target:  5'- -gAGGUgGAGGACGAGGCGG-CGgAGg -3'
miRNA:   3'- agUCUA-CUCCUGCUCCGCUaGCgUCg -5'
14210 3' -54.4 NC_003521.1 + 46071 0.7 0.895079
Target:  5'- -gGGAUGAGGucGCGAcgcccGGCG-UCGCAGa -3'
miRNA:   3'- agUCUACUCC--UGCU-----CCGCuAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 43627 0.7 0.901403
Target:  5'- -----cGAGGACGAGGaGGagGCGGCg -3'
miRNA:   3'- agucuaCUCCUGCUCCgCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 87570 0.7 0.907505
Target:  5'- -uGGAUGAcGGGC-AGGCGGgugCGCAcGCg -3'
miRNA:   3'- agUCUACU-CCUGcUCCGCUa--GCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 163188 0.67 0.966307
Target:  5'- gCAGcgGAcacGGugGuGGCGGcgGCAGCg -3'
miRNA:   3'- aGUCuaCU---CCugCuCCGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 224015 0.7 0.907505
Target:  5'- gCAGcgGcGGGCccGGCGGUCGgGGCg -3'
miRNA:   3'- aGUCuaCuCCUGcuCCGCUAGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 101974 0.7 0.907505
Target:  5'- -gAGAUGGGGuccaGcAGGCGGU-GCAGCu -3'
miRNA:   3'- agUCUACUCCug--C-UCCGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 216823 0.67 0.963098
Target:  5'- cCGGAUG-GcGCGcAGGaGGUCGCAGCc -3'
miRNA:   3'- aGUCUACuCcUGC-UCCgCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 120357 0.68 0.956053
Target:  5'- uUCGGAcgaagGAGGACGggaaGGGgGAUCgGgAGCg -3'
miRNA:   3'- -AGUCUa----CUCCUGC----UCCgCUAG-CgUCG- -5'
14210 3' -54.4 NC_003521.1 + 58020 0.68 0.959681
Target:  5'- -gAGAaGAGGACGAcgagGGCGcgCGCGuguuGCu -3'
miRNA:   3'- agUCUaCUCCUGCU----CCGCuaGCGU----CG- -5'
14210 3' -54.4 NC_003521.1 + 168506 0.73 0.761969
Target:  5'- aCGGAggcgGAGGACGGcgacgccagcaggcuGGCGGccagCGCGGCg -3'
miRNA:   3'- aGUCUa---CUCCUGCU---------------CCGCUa---GCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.