miRNA display CGI


Results 121 - 140 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 115928 0.67 0.963098
Target:  5'- -gAGGUGAGGccaguacgguUGGGGCGucUUGCGGCu -3'
miRNA:   3'- agUCUACUCCu---------GCUCCGCu-AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 163735 0.67 0.963098
Target:  5'- -gGGAUGAGcGGCGccGGCGGcaacaGCGGCg -3'
miRNA:   3'- agUCUACUC-CUGCu-CCGCUag---CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 216823 0.67 0.963098
Target:  5'- cCGGAUG-GcGCGcAGGaGGUCGCAGCc -3'
miRNA:   3'- aGUCUACuCcUGC-UCCgCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 133418 0.67 0.965995
Target:  5'- cUCAGGaacuacaUGuuuuGGAUGGGGCGccguUCGCAGg -3'
miRNA:   3'- -AGUCU-------ACu---CCUGCUCCGCu---AGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 163188 0.67 0.966307
Target:  5'- gCAGcgGAcacGGugGuGGCGGcgGCAGCg -3'
miRNA:   3'- aGUCuaCU---CCugCuCCGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 35784 0.67 0.969022
Target:  5'- gCAGAc--GGACGAaacggauccaucgGGCG-UCGCGGCa -3'
miRNA:   3'- aGUCUacuCCUGCU-------------CCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 100590 0.68 0.952209
Target:  5'- gUAGGggccgGuGGACGAGGCGG-CGaAGCg -3'
miRNA:   3'- aGUCUa----CuCCUGCUCCGCUaGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 121302 0.66 0.985223
Target:  5'- gCAGAUGAGGcCGAaGUGuUCGUGGg -3'
miRNA:   3'- aGUCUACUCCuGCUcCGCuAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 131067 0.66 0.985223
Target:  5'- -uGGAcGcGGugGcGGCGAcCGCGGCu -3'
miRNA:   3'- agUCUaCuCCugCuCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 87570 0.7 0.907505
Target:  5'- -uGGAUGAcGGGC-AGGCGGgugCGCAcGCg -3'
miRNA:   3'- agUCUACU-CCUGcUCCGCUa--GCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 224015 0.7 0.907505
Target:  5'- gCAGcgGcGGGCccGGCGGUCGgGGCg -3'
miRNA:   3'- aGUCuaCuCCUGcuCCGCUAGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 101974 0.7 0.907505
Target:  5'- -gAGAUGGGGuccaGcAGGCGGU-GCAGCu -3'
miRNA:   3'- agUCUACUCCug--C-UCCGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 74569 0.68 0.94386
Target:  5'- ----cUGAGGGCGGcgacggagcGGCGG-CGCGGCg -3'
miRNA:   3'- agucuACUCCUGCU---------CCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 62312 0.69 0.934613
Target:  5'- cCGGAUGGGcGACGAGGUac-CGCGacGCa -3'
miRNA:   3'- aGUCUACUC-CUGCUCCGcuaGCGU--CG- -5'
14210 3' -54.4 NC_003521.1 + 119033 0.68 0.948146
Target:  5'- uUCGGAU-AGGGCG-GGCGGcgUCGgGGUg -3'
miRNA:   3'- -AGUCUAcUCCUGCuCCGCU--AGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 137477 0.68 0.952209
Target:  5'- -uGGA--AGGGCGccGGCGuGUCGCGGCg -3'
miRNA:   3'- agUCUacUCCUGCu-CCGC-UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 167913 0.68 0.952209
Target:  5'- gCAGGUG-GGGCGccGCGAUCGaggGGUa -3'
miRNA:   3'- aGUCUACuCCUGCucCGCUAGCg--UCG- -5'
14210 3' -54.4 NC_003521.1 + 35968 0.65 0.986689
Target:  5'- -aGGAUGGGcGACGAGGaCGA-CGaaccgggcuugguCAGCg -3'
miRNA:   3'- agUCUACUC-CUGCUCC-GCUaGC-------------GUCG- -5'
14210 3' -54.4 NC_003521.1 + 99344 0.66 0.985223
Target:  5'- --uGAUGAGGAgGaAGGCGGUgagGCuGCu -3'
miRNA:   3'- aguCUACUCCUgC-UCCGCUAg--CGuCG- -5'
14210 3' -54.4 NC_003521.1 + 49642 0.66 0.985223
Target:  5'- cCAGcgGGGGGCaGuGGCGcUC-CAGCc -3'
miRNA:   3'- aGUCuaCUCCUG-CuCCGCuAGcGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.