miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 66802 1.09 0.004
Target:  5'- gCCACCGCCGUCUCCUCUCCCAUCUCUc -3'
miRNA:   3'- -GGUGGCGGCAGAGGAGAGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 214751 0.88 0.091508
Target:  5'- gCGCCGCCGUCUCCUCUUCCuccUCUCc -3'
miRNA:   3'- gGUGGCGGCAGAGGAGAGGGu--AGAGa -5'
14210 5' -57.7 NC_003521.1 + 60774 0.83 0.186772
Target:  5'- uCC-CCGCCGcCUCCUCuUCCCAUUUCUa -3'
miRNA:   3'- -GGuGGCGGCaGAGGAG-AGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 76622 0.8 0.279387
Target:  5'- aCCACCGCCGccccgccguuccgcCUCCUCUCCUAcUCUCg -3'
miRNA:   3'- -GGUGGCGGCa-------------GAGGAGAGGGU-AGAGa -5'
14210 5' -57.7 NC_003521.1 + 212751 0.79 0.29601
Target:  5'- cCCGCCGUCGUcCUCCcccCUCCUGUCUCUc -3'
miRNA:   3'- -GGUGGCGGCA-GAGGa--GAGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 22122 0.79 0.298634
Target:  5'- gCCGCCGCCGUCUCCUCcgccuucgccgccgCCC-UCUUa -3'
miRNA:   3'- -GGUGGCGGCAGAGGAGa-------------GGGuAGAGa -5'
14210 5' -57.7 NC_003521.1 + 188009 0.77 0.374742
Target:  5'- uCCACCGCCGUCUCCUCgCaggCGUCg-- -3'
miRNA:   3'- -GGUGGCGGCAGAGGAGaGg--GUAGaga -5'
14210 5' -57.7 NC_003521.1 + 236569 0.76 0.423281
Target:  5'- uCCGCCGUccuucuCGUcCUCCUC-CCCGUCUCg -3'
miRNA:   3'- -GGUGGCG------GCA-GAGGAGaGGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 212565 0.76 0.431731
Target:  5'- aUCGCCGCCGUgUUCCUCUCggcgCCGUCUUc -3'
miRNA:   3'- -GGUGGCGGCA-GAGGAGAG----GGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 59149 0.75 0.475398
Target:  5'- -aGCUGCCGUCU-CUCUCCgAUCUCc -3'
miRNA:   3'- ggUGGCGGCAGAgGAGAGGgUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 163121 0.75 0.493473
Target:  5'- aCCACCGCCGcCUCCUCgggCAUCUg- -3'
miRNA:   3'- -GGUGGCGGCaGAGGAGaggGUAGAga -5'
14210 5' -57.7 NC_003521.1 + 192104 0.75 0.493473
Target:  5'- gUCGCCGgCGUCUCCaccUCUCCCGgcCUCg -3'
miRNA:   3'- -GGUGGCgGCAGAGG---AGAGGGUa-GAGa -5'
14210 5' -57.7 NC_003521.1 + 122874 0.75 0.493473
Target:  5'- gCCGCCGCCGcgaugaugcUCUCCUCcuccCCCGUC-CUg -3'
miRNA:   3'- -GGUGGCGGC---------AGAGGAGa---GGGUAGaGA- -5'
14210 5' -57.7 NC_003521.1 + 222897 0.75 0.502629
Target:  5'- aCUACCuUCGUCUCCUCUgCCAcUCUCg -3'
miRNA:   3'- -GGUGGcGGCAGAGGAGAgGGU-AGAGa -5'
14210 5' -57.7 NC_003521.1 + 138166 0.75 0.502629
Target:  5'- --uUCGCCGUCUCCUCgcgCCUcuGUCUCg -3'
miRNA:   3'- gguGGCGGCAGAGGAGa--GGG--UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 104719 0.74 0.549423
Target:  5'- uCgACCGCgGUCUCUUCUUCUGUUUCUu -3'
miRNA:   3'- -GgUGGCGgCAGAGGAGAGGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 3654 0.74 0.56853
Target:  5'- gCCGCCGCCGUCUgCCUCggcggCCgGgaccCUCg -3'
miRNA:   3'- -GGUGGCGGCAGA-GGAGa----GGgUa---GAGa -5'
14210 5' -57.7 NC_003521.1 + 48382 0.73 0.578148
Target:  5'- gCCGCCGCCaugCcCCUCUCCUucGUCUCc -3'
miRNA:   3'- -GGUGGCGGca-GaGGAGAGGG--UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 43519 0.73 0.59748
Target:  5'- gCGCCuGCCGcCcCCUCUCCCGUCg-- -3'
miRNA:   3'- gGUGG-CGGCaGaGGAGAGGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 162251 0.73 0.607185
Target:  5'- cUCACCGCUcUCUCuCUCUCUguUCUCUc -3'
miRNA:   3'- -GGUGGCGGcAGAG-GAGAGGguAGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.