Results 21 - 40 of 117 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 214788 | 0.66 | 0.922256 |
Target: 5'- cUCGCCGCCGUCcUCUUCaccgCCGUCg-- -3' miRNA: 3'- -GGUGGCGGCAG-AGGAGag--GGUAGaga -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 116223 | 0.66 | 0.922256 |
Target: 5'- gCCGCCGCuuCGUCgUCCUCgucggCCAUCggCUg -3' miRNA: 3'- -GGUGGCG--GCAG-AGGAGag---GGUAGa-GA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 169003 | 0.66 | 0.916893 |
Target: 5'- gCugCGCCGUCUCcCUCUgUUGUUUUg -3' miRNA: 3'- gGugGCGGCAGAG-GAGAgGGUAGAGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 43834 | 0.66 | 0.916893 |
Target: 5'- gCCGCCGCCGg--CCgCgggCCCGUCa-- -3' miRNA: 3'- -GGUGGCGGCagaGGaGa--GGGUAGaga -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 4350 | 0.66 | 0.916345 |
Target: 5'- aCCGCCGCCGgcggUUCgCUCaucgcggcccgcgUCCCG-CUCg -3' miRNA: 3'- -GGUGGCGGCa---GAG-GAG-------------AGGGUaGAGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 223355 | 0.67 | 0.913571 |
Target: 5'- aCCGgUGCCGUCgUCUCUCCUccgagcgcugccgcgGUUUCUg -3' miRNA: 3'- -GGUgGCGGCAGaGGAGAGGG---------------UAGAGA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 94166 | 0.67 | 0.911314 |
Target: 5'- uUCGuuGCCGUcCUCCUCg-CCGUCgUCg -3' miRNA: 3'- -GGUggCGGCA-GAGGAGagGGUAG-AGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 209740 | 0.67 | 0.911314 |
Target: 5'- gCCGCCGCCGUCgUCgCUgUUggCCGguUCUCa -3' miRNA: 3'- -GGUGGCGGCAG-AG-GAgAG--GGU--AGAGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 189996 | 0.67 | 0.911314 |
Target: 5'- -aGCCGCCGUCaCCgCUCCCAc---- -3' miRNA: 3'- ggUGGCGGCAGaGGaGAGGGUagaga -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 97411 | 0.67 | 0.911314 |
Target: 5'- aUCGUCGCCGUCgguaCCaUCUCCCcuccGUCUCc -3' miRNA: 3'- -GGUGGCGGCAGa---GG-AGAGGG----UAGAGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 61093 | 0.67 | 0.911314 |
Target: 5'- -gAUCGCCGUCaUCCUCUCgCAgCUg- -3' miRNA: 3'- ggUGGCGGCAG-AGGAGAGgGUaGAga -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 35537 | 0.67 | 0.911314 |
Target: 5'- uCCGCCauGCCGUCgucgcucuuuuUCUUCUgCCugGUCUCUg -3' miRNA: 3'- -GGUGG--CGGCAG-----------AGGAGAgGG--UAGAGA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 222936 | 0.67 | 0.911314 |
Target: 5'- uCCACCuucucuaUCGUUUCCUCUCCCccCUUg -3' miRNA: 3'- -GGUGGc------GGCAGAGGAGAGGGuaGAGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 171085 | 0.67 | 0.905521 |
Target: 5'- gCCACCGCCGcCUCCcCgCCCGc---- -3' miRNA: 3'- -GGUGGCGGCaGAGGaGaGGGUagaga -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 23811 | 0.67 | 0.905521 |
Target: 5'- aCACCucCCGUCUCUUCga-CGUCUCg -3' miRNA: 3'- gGUGGc-GGCAGAGGAGaggGUAGAGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 81335 | 0.67 | 0.905521 |
Target: 5'- cCUGgUGCCGUUucucaUCCUCUCCaagGUCUCg -3' miRNA: 3'- -GGUgGCGGCAG-----AGGAGAGGg--UAGAGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 190909 | 0.67 | 0.899517 |
Target: 5'- -aGCUGCCGcCcCCUCUCCUuUCUUa -3' miRNA: 3'- ggUGGCGGCaGaGGAGAGGGuAGAGa -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 140401 | 0.67 | 0.899517 |
Target: 5'- gCGCCGCCGcUUCUUCUCaccaCCAUCa-- -3' miRNA: 3'- gGUGGCGGCaGAGGAGAG----GGUAGaga -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 120401 | 0.67 | 0.899517 |
Target: 5'- gCAUCGgUGUcCUCCUCUucaCCUGUCUCUu -3' miRNA: 3'- gGUGGCgGCA-GAGGAGA---GGGUAGAGA- -5' |
|||||||
14210 | 5' | -57.7 | NC_003521.1 | + | 222723 | 0.67 | 0.893302 |
Target: 5'- uCCACCGCUacCUCCUCcgUCCCcgcggccgucGUCUCc -3' miRNA: 3'- -GGUGGCGGcaGAGGAG--AGGG----------UAGAGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home