miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 5' -57.7 NC_003521.1 + 214788 0.66 0.922256
Target:  5'- cUCGCCGCCGUCcUCUUCaccgCCGUCg-- -3'
miRNA:   3'- -GGUGGCGGCAG-AGGAGag--GGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 116223 0.66 0.922256
Target:  5'- gCCGCCGCuuCGUCgUCCUCgucggCCAUCggCUg -3'
miRNA:   3'- -GGUGGCG--GCAG-AGGAGag---GGUAGa-GA- -5'
14210 5' -57.7 NC_003521.1 + 169003 0.66 0.916893
Target:  5'- gCugCGCCGUCUCcCUCUgUUGUUUUg -3'
miRNA:   3'- gGugGCGGCAGAG-GAGAgGGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 43834 0.66 0.916893
Target:  5'- gCCGCCGCCGg--CCgCgggCCCGUCa-- -3'
miRNA:   3'- -GGUGGCGGCagaGGaGa--GGGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 4350 0.66 0.916345
Target:  5'- aCCGCCGCCGgcggUUCgCUCaucgcggcccgcgUCCCG-CUCg -3'
miRNA:   3'- -GGUGGCGGCa---GAG-GAG-------------AGGGUaGAGa -5'
14210 5' -57.7 NC_003521.1 + 223355 0.67 0.913571
Target:  5'- aCCGgUGCCGUCgUCUCUCCUccgagcgcugccgcgGUUUCUg -3'
miRNA:   3'- -GGUgGCGGCAGaGGAGAGGG---------------UAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 94166 0.67 0.911314
Target:  5'- uUCGuuGCCGUcCUCCUCg-CCGUCgUCg -3'
miRNA:   3'- -GGUggCGGCA-GAGGAGagGGUAG-AGa -5'
14210 5' -57.7 NC_003521.1 + 209740 0.67 0.911314
Target:  5'- gCCGCCGCCGUCgUCgCUgUUggCCGguUCUCa -3'
miRNA:   3'- -GGUGGCGGCAG-AG-GAgAG--GGU--AGAGa -5'
14210 5' -57.7 NC_003521.1 + 189996 0.67 0.911314
Target:  5'- -aGCCGCCGUCaCCgCUCCCAc---- -3'
miRNA:   3'- ggUGGCGGCAGaGGaGAGGGUagaga -5'
14210 5' -57.7 NC_003521.1 + 97411 0.67 0.911314
Target:  5'- aUCGUCGCCGUCgguaCCaUCUCCCcuccGUCUCc -3'
miRNA:   3'- -GGUGGCGGCAGa---GG-AGAGGG----UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 61093 0.67 0.911314
Target:  5'- -gAUCGCCGUCaUCCUCUCgCAgCUg- -3'
miRNA:   3'- ggUGGCGGCAG-AGGAGAGgGUaGAga -5'
14210 5' -57.7 NC_003521.1 + 35537 0.67 0.911314
Target:  5'- uCCGCCauGCCGUCgucgcucuuuuUCUUCUgCCugGUCUCUg -3'
miRNA:   3'- -GGUGG--CGGCAG-----------AGGAGAgGG--UAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 222936 0.67 0.911314
Target:  5'- uCCACCuucucuaUCGUUUCCUCUCCCccCUUg -3'
miRNA:   3'- -GGUGGc------GGCAGAGGAGAGGGuaGAGa -5'
14210 5' -57.7 NC_003521.1 + 171085 0.67 0.905521
Target:  5'- gCCACCGCCGcCUCCcCgCCCGc---- -3'
miRNA:   3'- -GGUGGCGGCaGAGGaGaGGGUagaga -5'
14210 5' -57.7 NC_003521.1 + 23811 0.67 0.905521
Target:  5'- aCACCucCCGUCUCUUCga-CGUCUCg -3'
miRNA:   3'- gGUGGc-GGCAGAGGAGaggGUAGAGa -5'
14210 5' -57.7 NC_003521.1 + 81335 0.67 0.905521
Target:  5'- cCUGgUGCCGUUucucaUCCUCUCCaagGUCUCg -3'
miRNA:   3'- -GGUgGCGGCAG-----AGGAGAGGg--UAGAGa -5'
14210 5' -57.7 NC_003521.1 + 190909 0.67 0.899517
Target:  5'- -aGCUGCCGcCcCCUCUCCUuUCUUa -3'
miRNA:   3'- ggUGGCGGCaGaGGAGAGGGuAGAGa -5'
14210 5' -57.7 NC_003521.1 + 140401 0.67 0.899517
Target:  5'- gCGCCGCCGcUUCUUCUCaccaCCAUCa-- -3'
miRNA:   3'- gGUGGCGGCaGAGGAGAG----GGUAGaga -5'
14210 5' -57.7 NC_003521.1 + 120401 0.67 0.899517
Target:  5'- gCAUCGgUGUcCUCCUCUucaCCUGUCUCUu -3'
miRNA:   3'- gGUGGCgGCA-GAGGAGA---GGGUAGAGA- -5'
14210 5' -57.7 NC_003521.1 + 222723 0.67 0.893302
Target:  5'- uCCACCGCUacCUCCUCcgUCCCcgcggccgucGUCUCc -3'
miRNA:   3'- -GGUGGCGGcaGAGGAG--AGGG----------UAGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.