miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14211 5' -53.3 NC_003521.1 + 36943 0.66 0.985291
Target:  5'- uGGAGGACgaGGaagccGAGCugCccggcgaacAUGACGUg -3'
miRNA:   3'- -UCUCCUGaaCCa----CUCGugG---------UACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 143057 0.66 0.985291
Target:  5'- --uGGAUggUGGUGguGGCGCCG-GugGCg -3'
miRNA:   3'- ucuCCUGa-ACCAC--UCGUGGUaCugCG- -5'
14211 5' -53.3 NC_003521.1 + 199764 0.67 0.983502
Target:  5'- aGGAGGugUgcguaguguguUGGUGAGUGCUuuuauGUGugGa -3'
miRNA:   3'- -UCUCCugA-----------ACCACUCGUGG-----UACugCg -5'
14211 5' -53.3 NC_003521.1 + 216187 0.67 0.983502
Target:  5'- -cAGGACgaaGGcgcUGAGCACC--GGCGCg -3'
miRNA:   3'- ucUCCUGaa-CC---ACUCGUGGuaCUGCG- -5'
14211 5' -53.3 NC_003521.1 + 98310 0.67 0.983502
Target:  5'- aGGAGGAagUGGUGgcGGCGgCCAcGACGg -3'
miRNA:   3'- -UCUCCUgaACCAC--UCGU-GGUaCUGCg -5'
14211 5' -53.3 NC_003521.1 + 35916 0.67 0.981756
Target:  5'- cAGA-GAC-UGGUGGGCGCCugguccucaacgggGACGUa -3'
miRNA:   3'- -UCUcCUGaACCACUCGUGGua------------CUGCG- -5'
14211 5' -53.3 NC_003521.1 + 134453 0.67 0.981554
Target:  5'- --cGGGCgugUGGUagaaGAGCACCcgGAUGa -3'
miRNA:   3'- ucuCCUGa--ACCA----CUCGUGGuaCUGCg -5'
14211 5' -53.3 NC_003521.1 + 90927 0.67 0.981554
Target:  5'- cGGAGGAgg-GGUGGGCGCg--GGCGa -3'
miRNA:   3'- -UCUCCUgaaCCACUCGUGguaCUGCg -5'
14211 5' -53.3 NC_003521.1 + 185170 0.67 0.979438
Target:  5'- cGAcGACgaGGUGGcGCACCuguggagcGUGACGCc -3'
miRNA:   3'- uCUcCUGaaCCACU-CGUGG--------UACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 39229 0.67 0.979438
Target:  5'- cGGGGACagcGGUG-GC-CCGcGGCGCg -3'
miRNA:   3'- uCUCCUGaa-CCACuCGuGGUaCUGCG- -5'
14211 5' -53.3 NC_003521.1 + 239457 0.67 0.979438
Target:  5'- cGGGGACagcGGUG-GC-CCGcGGCGCg -3'
miRNA:   3'- uCUCCUGaa-CCACuCGuGGUaCUGCG- -5'
14211 5' -53.3 NC_003521.1 + 147299 0.67 0.979438
Target:  5'- gAGGGGGUggaaUGGUGAuaccCACCAcGACGCg -3'
miRNA:   3'- -UCUCCUGa---ACCACUc---GUGGUaCUGCG- -5'
14211 5' -53.3 NC_003521.1 + 15129 0.67 0.979216
Target:  5'- cGAGGGCgccUGG-GAGCGCC-UGgaccccaACGCc -3'
miRNA:   3'- uCUCCUGa--ACCaCUCGUGGuAC-------UGCG- -5'
14211 5' -53.3 NC_003521.1 + 98956 0.67 0.978084
Target:  5'- uGAGGGCcUGGUGgcuGGUgaggcggugccgggaGCCGUaGGCGCg -3'
miRNA:   3'- uCUCCUGaACCAC---UCG---------------UGGUA-CUGCG- -5'
14211 5' -53.3 NC_003521.1 + 215384 0.67 0.977146
Target:  5'- cAGAGGACggccaGGaaGGGCACCAggaaggUGAgGCu -3'
miRNA:   3'- -UCUCCUGaa---CCa-CUCGUGGU------ACUgCG- -5'
14211 5' -53.3 NC_003521.1 + 104689 0.67 0.977146
Target:  5'- gAGGGGGCc--GUGGGCGgCGUcGACGUg -3'
miRNA:   3'- -UCUCCUGaacCACUCGUgGUA-CUGCG- -5'
14211 5' -53.3 NC_003521.1 + 52882 0.67 0.977146
Target:  5'- uGGGGACUuucgUGGUuuGGcCACCAUucaaGACGCa -3'
miRNA:   3'- uCUCCUGA----ACCAc-UC-GUGGUA----CUGCG- -5'
14211 5' -53.3 NC_003521.1 + 18548 0.67 0.977146
Target:  5'- -cGGGGCUc--UGGGCACCAUcACGCg -3'
miRNA:   3'- ucUCCUGAaccACUCGUGGUAcUGCG- -5'
14211 5' -53.3 NC_003521.1 + 177792 0.67 0.977146
Target:  5'- cGGGGcCUguccgcUGGUGGGCGUCGUGgGCGCc -3'
miRNA:   3'- uCUCCuGA------ACCACUCGUGGUAC-UGCG- -5'
14211 5' -53.3 NC_003521.1 + 226881 0.67 0.977146
Target:  5'- cGAGGGCagcugcGG-GGGCACCAcGGCGg -3'
miRNA:   3'- uCUCCUGaa----CCaCUCGUGGUaCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.