miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14214 3' -51.4 NC_003521.1 + 89367 0.65 0.998389
Target:  5'- uGCCCCAgacaccgacccaGACcCACG--ACACGUCg -3'
miRNA:   3'- gCGGGGUaa----------CUGcGUGUaaUGUGCAG- -5'
14214 3' -51.4 NC_003521.1 + 35023 0.66 0.998208
Target:  5'- uGCCCgGcgGACGCGguUggGCACGcUCa -3'
miRNA:   3'- gCGGGgUaaCUGCGUguAa-UGUGC-AG- -5'
14214 3' -51.4 NC_003521.1 + 224785 0.66 0.998208
Target:  5'- gCGCCCgcaccacguCGUgcggGACGCGCGUgGCguaggGCGUCu -3'
miRNA:   3'- -GCGGG---------GUAa---CUGCGUGUAaUG-----UGCAG- -5'
14214 3' -51.4 NC_003521.1 + 163823 0.66 0.998208
Target:  5'- uGCCCCug-GACG-GCGgcguCACGUCc -3'
miRNA:   3'- gCGGGGuaaCUGCgUGUaau-GUGCAG- -5'
14214 3' -51.4 NC_003521.1 + 40043 0.66 0.998208
Target:  5'- aGCUCC-UUGACcagcuguuuGCACAgacucuggaUGCGCGUCa -3'
miRNA:   3'- gCGGGGuAACUG---------CGUGUa--------AUGUGCAG- -5'
14214 3' -51.4 NC_003521.1 + 27030 0.66 0.998208
Target:  5'- uGCgCCGUUucGGCGUccACAU-GCGCGUCu -3'
miRNA:   3'- gCGgGGUAA--CUGCG--UGUAaUGUGCAG- -5'
14214 3' -51.4 NC_003521.1 + 55412 0.66 0.998208
Target:  5'- aCGCUgagGUUGACGCACGagaccucCACGUCg -3'
miRNA:   3'- -GCGGgg-UAACUGCGUGUaau----GUGCAG- -5'
14214 3' -51.4 NC_003521.1 + 78577 0.66 0.997867
Target:  5'- -cCCCCGUUGACGCcCAccccgccaGCGcCGUCg -3'
miRNA:   3'- gcGGGGUAACUGCGuGUaa------UGU-GCAG- -5'
14214 3' -51.4 NC_003521.1 + 120065 0.66 0.997867
Target:  5'- uGCCCC-UUGACGUuCAgguC-CGUCa -3'
miRNA:   3'- gCGGGGuAACUGCGuGUaauGuGCAG- -5'
14214 3' -51.4 NC_003521.1 + 115559 0.66 0.997867
Target:  5'- aGCgCCGUgcugcgcgGACGUugAUcucgcccccgUGCGCGUCg -3'
miRNA:   3'- gCGgGGUAa-------CUGCGugUA----------AUGUGCAG- -5'
14214 3' -51.4 NC_003521.1 + 74338 0.66 0.997867
Target:  5'- gCGCCCCGcUGGaugGCGCugcUGCGCGg- -3'
miRNA:   3'- -GCGGGGUaACUg--CGUGua-AUGUGCag -5'
14214 3' -51.4 NC_003521.1 + 89391 0.66 0.997867
Target:  5'- uCGCCgCAcgGuACGCACGc-GCACGUUg -3'
miRNA:   3'- -GCGGgGUaaC-UGCGUGUaaUGUGCAG- -5'
14214 3' -51.4 NC_003521.1 + 223474 0.66 0.997474
Target:  5'- aGUCucggCCGUUGGCcaccaGCGCGUUGCGcCGUCu -3'
miRNA:   3'- gCGG----GGUAACUG-----CGUGUAAUGU-GCAG- -5'
14214 3' -51.4 NC_003521.1 + 185773 0.66 0.997474
Target:  5'- gGCCgCGaUGGaGCGCAagACGCGUCu -3'
miRNA:   3'- gCGGgGUaACUgCGUGUaaUGUGCAG- -5'
14214 3' -51.4 NC_003521.1 + 111041 0.66 0.997474
Target:  5'- gGCCUCGgc-GCGCACG-UGCGCGg- -3'
miRNA:   3'- gCGGGGUaacUGCGUGUaAUGUGCag -5'
14214 3' -51.4 NC_003521.1 + 176673 0.66 0.997474
Target:  5'- gCGaguaCUCGUUGACG-GCGUUGCcCGUCa -3'
miRNA:   3'- -GCg---GGGUAACUGCgUGUAAUGuGCAG- -5'
14214 3' -51.4 NC_003521.1 + 125578 0.66 0.997388
Target:  5'- uGCCCCcgaccacggcGGCGCACA--ACACGg- -3'
miRNA:   3'- gCGGGGuaa-------CUGCGUGUaaUGUGCag -5'
14214 3' -51.4 NC_003521.1 + 234474 0.66 0.997345
Target:  5'- gGCCCCucugggauccggaucUGGCGCGCGUUAUccucaGUCu -3'
miRNA:   3'- gCGGGGua-------------ACUGCGUGUAAUGug---CAG- -5'
14214 3' -51.4 NC_003521.1 + 25831 0.66 0.997022
Target:  5'- uCGCUCCA--GGCGUACAguugggACACGg- -3'
miRNA:   3'- -GCGGGGUaaCUGCGUGUaa----UGUGCag -5'
14214 3' -51.4 NC_003521.1 + 28370 0.66 0.997022
Target:  5'- gGCCUgGUUGAUG-GCGUgGCACGUg -3'
miRNA:   3'- gCGGGgUAACUGCgUGUAaUGUGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.