miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 126393 0.66 0.988325
Target:  5'- cGGCCgucagGGCGAagcccGGGugGAUGUgGGCc -3'
miRNA:   3'- -CUGG-----CCGCUgua--CCCugCUAUAgCUG- -5'
14215 3' -54.2 NC_003521.1 + 86709 0.66 0.988325
Target:  5'- --gCGGCGACGacGaGGCGGUgAUCGACa -3'
miRNA:   3'- cugGCCGCUGUacC-CUGCUA-UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 73201 0.66 0.988325
Target:  5'- aGACCcccGCGA-AUGGGACGA---CGACg -3'
miRNA:   3'- -CUGGc--CGCUgUACCCUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 76326 0.66 0.988325
Target:  5'- --gCGGCGACAgcugcggaGGcGACGGUGaCGGCu -3'
miRNA:   3'- cugGCCGCUGUa-------CC-CUGCUAUaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 213596 0.66 0.987453
Target:  5'- aGCCGGCGAUgaccaggcuguugGGGugGcgGUCGcCg -3'
miRNA:   3'- cUGGCCGCUGua-----------CCCugCuaUAGCuG- -5'
14215 3' -54.2 NC_003521.1 + 205220 0.66 0.986844
Target:  5'- gGGCCGGCaGGCGgaucagGGGACcc-AUCGAa -3'
miRNA:   3'- -CUGGCCG-CUGUa-----CCCUGcuaUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 216294 0.66 0.986844
Target:  5'- gGAgCGGaCGACGUuggcgGGGGUGAUGUCGGg -3'
miRNA:   3'- -CUgGCC-GCUGUA-----CCCUGCUAUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 69782 0.66 0.986844
Target:  5'- --aCGGCGACGaGGGAgCGGccGUCGAg -3'
miRNA:   3'- cugGCCGCUGUaCCCU-GCUa-UAGCUg -5'
14215 3' -54.2 NC_003521.1 + 135324 0.66 0.986844
Target:  5'- aGAgCGGU-ACAccacUGGGACGucGUCGACa -3'
miRNA:   3'- -CUgGCCGcUGU----ACCCUGCuaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 42556 0.66 0.986844
Target:  5'- uGCUGGUGcCGcUGGGACGGcUAUCGcuGCg -3'
miRNA:   3'- cUGGCCGCuGU-ACCCUGCU-AUAGC--UG- -5'
14215 3' -54.2 NC_003521.1 + 38284 0.66 0.986844
Target:  5'- aGGCCGGCGcGCAgcaGGuGCGAgagcucGUCGGCc -3'
miRNA:   3'- -CUGGCCGC-UGUa--CCcUGCUa-----UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 183430 0.66 0.985223
Target:  5'- cGCaCGGCGcUGUGGcGCGAgAUCGACg -3'
miRNA:   3'- cUG-GCCGCuGUACCcUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 48716 0.66 0.985223
Target:  5'- aGGCCGGgaGAgGUGGaGACGccggCGACg -3'
miRNA:   3'- -CUGGCCg-CUgUACC-CUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 54498 0.66 0.985223
Target:  5'- uGGCCGGCGGCccGGcGugGAccaggAUCuGCa -3'
miRNA:   3'- -CUGGCCGCUGuaCC-CugCUa----UAGcUG- -5'
14215 3' -54.2 NC_003521.1 + 69116 0.66 0.985223
Target:  5'- cGCCGGCGACGU--GACGuuguuUGUCGuCa -3'
miRNA:   3'- cUGGCCGCUGUAccCUGCu----AUAGCuG- -5'
14215 3' -54.2 NC_003521.1 + 216912 0.66 0.985223
Target:  5'- gGGCgCGGUGGCAgcGGAgGcgGUCGACc -3'
miRNA:   3'- -CUG-GCCGCUGUacCCUgCuaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 108032 0.66 0.985223
Target:  5'- cGGCgucaGGCGGCGgcGGGAUGAcg-CGACg -3'
miRNA:   3'- -CUGg---CCGCUGUa-CCCUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 182837 0.66 0.985053
Target:  5'- cGAUCGGCGGCGcUGacaacagcagcgaGGACGAUGaUGAUa -3'
miRNA:   3'- -CUGGCCGCUGU-AC-------------CCUGCUAUaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 187897 0.66 0.983454
Target:  5'- cACgGGCGGCG-GGGGCag-GUCGAUc -3'
miRNA:   3'- cUGgCCGCUGUaCCCUGcuaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 148173 0.66 0.983454
Target:  5'- cGACCGGgGGgAUGGGACcc--UCGGu -3'
miRNA:   3'- -CUGGCCgCUgUACCCUGcuauAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.