miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 133762 0.66 0.983454
Target:  5'- -cCCGGCGAUuccgGGGACG----CGGCg -3'
miRNA:   3'- cuGGCCGCUGua--CCCUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 52300 0.66 0.981528
Target:  5'- --aUGGCGACGUGGGGCccgc-CGGCc -3'
miRNA:   3'- cugGCCGCUGUACCCUGcuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 187897 0.66 0.983454
Target:  5'- cACgGGCGGCG-GGGGCag-GUCGAUc -3'
miRNA:   3'- cUGgCCGCUGUaCCCUGcuaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 213596 0.66 0.987453
Target:  5'- aGCCGGCGAUgaccaggcuguugGGGugGcgGUCGcCg -3'
miRNA:   3'- cUGGCCGCUGua-----------CCCugCuaUAGCuG- -5'
14215 3' -54.2 NC_003521.1 + 86715 0.66 0.983454
Target:  5'- cGGCC-GCGAgAUGGGcCGGUucUUGACg -3'
miRNA:   3'- -CUGGcCGCUgUACCCuGCUAu-AGCUG- -5'
14215 3' -54.2 NC_003521.1 + 69401 0.66 0.983454
Target:  5'- aGACgCaGCaGACGcGGGACGGUGaCGGCg -3'
miRNA:   3'- -CUG-GcCG-CUGUaCCCUGCUAUaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 54498 0.66 0.985223
Target:  5'- uGGCCGGCGGCccGGcGugGAccaggAUCuGCa -3'
miRNA:   3'- -CUGGCCGCUGuaCC-CugCUa----UAGcUG- -5'
14215 3' -54.2 NC_003521.1 + 69116 0.66 0.985223
Target:  5'- cGCCGGCGACGU--GACGuuguuUGUCGuCa -3'
miRNA:   3'- cUGGCCGCUGUAccCUGCu----AUAGCuG- -5'
14215 3' -54.2 NC_003521.1 + 69782 0.66 0.986844
Target:  5'- --aCGGCGACGaGGGAgCGGccGUCGAg -3'
miRNA:   3'- cugGCCGCUGUaCCCU-GCUa-UAGCUg -5'
14215 3' -54.2 NC_003521.1 + 212888 0.66 0.981528
Target:  5'- cGCgGGCGACggGGGuguCGGUGgacUCGAg -3'
miRNA:   3'- cUGgCCGCUGuaCCCu--GCUAU---AGCUg -5'
14215 3' -54.2 NC_003521.1 + 51167 0.66 0.980919
Target:  5'- aACCGGCuuugguccagucccGAUAcGuGGACGAUGUCGGu -3'
miRNA:   3'- cUGGCCG--------------CUGUaC-CCUGCUAUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 182181 0.66 0.97944
Target:  5'- cGGCCGGCG-CGUGGGGau---UCaGACa -3'
miRNA:   3'- -CUGGCCGCuGUACCCUgcuauAG-CUG- -5'
14215 3' -54.2 NC_003521.1 + 216294 0.66 0.986844
Target:  5'- gGAgCGGaCGACGUuggcgGGGGUGAUGUCGGg -3'
miRNA:   3'- -CUgGCC-GCUGUA-----CCCUGCUAUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 137530 0.66 0.981528
Target:  5'- uACCGGCG-CGUGGuggccuacGACGAga-CGGCg -3'
miRNA:   3'- cUGGCCGCuGUACC--------CUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 98633 0.66 0.97944
Target:  5'- aGAgCGGCGGCGgcgGuaGCGGcGUCGACg -3'
miRNA:   3'- -CUgGCCGCUGUa--CccUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 86709 0.66 0.988325
Target:  5'- --gCGGCGACGacGaGGCGGUgAUCGACa -3'
miRNA:   3'- cugGCCGCUGUacC-CUGCUA-UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 148173 0.66 0.983454
Target:  5'- cGACCGGgGGgAUGGGACcc--UCGGu -3'
miRNA:   3'- -CUGGCCgCUgUACCCUGcuauAGCUg -5'
14215 3' -54.2 NC_003521.1 + 126393 0.66 0.988325
Target:  5'- cGGCCgucagGGCGAagcccGGGugGAUGUgGGCc -3'
miRNA:   3'- -CUGG-----CCGCUgua--CCCugCUAUAgCUG- -5'
14215 3' -54.2 NC_003521.1 + 84422 0.66 0.981528
Target:  5'- uGACCaGCGGCAgGGuGGCGAag-CGGCc -3'
miRNA:   3'- -CUGGcCGCUGUaCC-CUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 31703 0.66 0.978781
Target:  5'- gGGgCGGCGGCAgcaugugcgcgugcUGGGACGccg-CGGCc -3'
miRNA:   3'- -CUgGCCGCUGU--------------ACCCUGCuauaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.