miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 183430 0.66 0.985223
Target:  5'- cGCaCGGCGcUGUGGcGCGAgAUCGACg -3'
miRNA:   3'- cUG-GCCGCuGUACCcUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 42556 0.66 0.986844
Target:  5'- uGCUGGUGcCGcUGGGACGGcUAUCGcuGCg -3'
miRNA:   3'- cUGGCCGCuGU-ACCCUGCU-AUAGC--UG- -5'
14215 3' -54.2 NC_003521.1 + 44392 0.66 0.983454
Target:  5'- aGCCGGcCGACccGGG-CGAcagCGACu -3'
miRNA:   3'- cUGGCC-GCUGuaCCCuGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 48716 0.66 0.985223
Target:  5'- aGGCCGGgaGAgGUGGaGACGccggCGACg -3'
miRNA:   3'- -CUGGCCg-CUgUACC-CUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 126393 0.66 0.988325
Target:  5'- cGGCCgucagGGCGAagcccGGGugGAUGUgGGCc -3'
miRNA:   3'- -CUGG-----CCGCUgua--CCCugCUAUAgCUG- -5'
14215 3' -54.2 NC_003521.1 + 213596 0.66 0.987453
Target:  5'- aGCCGGCGAUgaccaggcuguugGGGugGcgGUCGcCg -3'
miRNA:   3'- cUGGCCGCUGua-----------CCCugCuaUAGCuG- -5'
14215 3' -54.2 NC_003521.1 + 216294 0.66 0.986844
Target:  5'- gGAgCGGaCGACGUuggcgGGGGUGAUGUCGGg -3'
miRNA:   3'- -CUgGCC-GCUGUA-----CCCUGCUAUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 216912 0.66 0.985223
Target:  5'- gGGCgCGGUGGCAgcGGAgGcgGUCGACc -3'
miRNA:   3'- -CUG-GCCGCUGUacCCUgCuaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 86709 0.66 0.988325
Target:  5'- --gCGGCGACGacGaGGCGGUgAUCGACa -3'
miRNA:   3'- cugGCCGCUGUacC-CUGCUA-UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 73201 0.66 0.988325
Target:  5'- aGACCcccGCGA-AUGGGACGA---CGACg -3'
miRNA:   3'- -CUGGc--CGCUgUACCCUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 38284 0.66 0.986844
Target:  5'- aGGCCGGCGcGCAgcaGGuGCGAgagcucGUCGGCc -3'
miRNA:   3'- -CUGGCCGC-UGUa--CCcUGCUa-----UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 135324 0.66 0.986844
Target:  5'- aGAgCGGU-ACAccacUGGGACGucGUCGACa -3'
miRNA:   3'- -CUgGCCGcUGU----ACCCUGCuaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 218091 0.67 0.977181
Target:  5'- --gCGGCGGCGccGGuGACGAUGagGGCg -3'
miRNA:   3'- cugGCCGCUGUa-CC-CUGCUAUagCUG- -5'
14215 3' -54.2 NC_003521.1 + 165447 0.67 0.977181
Target:  5'- uGACCa-CGACGUGGccccuGACGAUGUUGAg -3'
miRNA:   3'- -CUGGccGCUGUACC-----CUGCUAUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 5646 0.67 0.969314
Target:  5'- gGACCcacauGGCGGCGgaGGGugGGggGUCGAg -3'
miRNA:   3'- -CUGG-----CCGCUGUa-CCCugCUa-UAGCUg -5'
14215 3' -54.2 NC_003521.1 + 106606 0.67 0.969314
Target:  5'- gGACC-GUGAgcauCGUGGGACGAUgccaaaggcgAUCGAUa -3'
miRNA:   3'- -CUGGcCGCU----GUACCCUGCUA----------UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 116460 0.67 0.969314
Target:  5'- cGACgCGGcCGugGUGGGACacGUggCGGCg -3'
miRNA:   3'- -CUG-GCC-GCugUACCCUGc-UAuaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 111385 0.67 0.972125
Target:  5'- --gCGGCGACGgagGGGACGcgcugcagCGGCu -3'
miRNA:   3'- cugGCCGCUGUa--CCCUGCuaua----GCUG- -5'
14215 3' -54.2 NC_003521.1 + 198457 0.67 0.977181
Target:  5'- uGGCCGuCGGCu---GGCGGUGUCGACa -3'
miRNA:   3'- -CUGGCcGCUGuaccCUGCUAUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 218715 0.67 0.972125
Target:  5'- --aCGGCGGCGgcgGcGGGCGAgaagCGGCg -3'
miRNA:   3'- cugGCCGCUGUa--C-CCUGCUaua-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.