miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 135242 0.67 0.969314
Target:  5'- cGCCGGCGGC--GGcGACGAcacggCGGCg -3'
miRNA:   3'- cUGGCCGCUGuaCC-CUGCUaua--GCUG- -5'
14215 3' -54.2 NC_003521.1 + 165447 0.67 0.977181
Target:  5'- uGACCa-CGACGUGGccccuGACGAUGUUGAg -3'
miRNA:   3'- -CUGGccGCUGUACC-----CUGCUAUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 126711 0.67 0.974745
Target:  5'- uGCCGGUGAgCAgauccgaGGcGGCGcgGUCGGCg -3'
miRNA:   3'- cUGGCCGCU-GUa------CC-CUGCuaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 53394 0.68 0.956053
Target:  5'- aGGCCgcGGCGAgCAgGGGAUGGcgcGUCGGCa -3'
miRNA:   3'- -CUGG--CCGCU-GUaCCCUGCUa--UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 70366 0.68 0.956053
Target:  5'- -gUCGGCGACAugacUGGGGCGcgAgggGACa -3'
miRNA:   3'- cuGGCCGCUGU----ACCCUGCuaUag-CUG- -5'
14215 3' -54.2 NC_003521.1 + 113856 0.68 0.956053
Target:  5'- cGGCCGGCGACGacGGcGCGGguuccgCGGCg -3'
miRNA:   3'- -CUGGCCGCUGUacCC-UGCUaua---GCUG- -5'
14215 3' -54.2 NC_003521.1 + 71860 0.68 0.959681
Target:  5'- -gUCGGCGACAgcagcGGGAgCGAcggCGACa -3'
miRNA:   3'- cuGGCCGCUGUa----CCCU-GCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 162245 0.68 0.963098
Target:  5'- cGCUGGCGGgGUGGGcgucaACGGgggugCGACa -3'
miRNA:   3'- cUGGCCGCUgUACCC-----UGCUaua--GCUG- -5'
14215 3' -54.2 NC_003521.1 + 34080 0.68 0.948146
Target:  5'- -gUCGGCGGCAgucGGCGAUAUCGcGCg -3'
miRNA:   3'- cuGGCCGCUGUaccCUGCUAUAGC-UG- -5'
14215 3' -54.2 NC_003521.1 + 165153 0.68 0.948146
Target:  5'- uGCCGGCGugAUGGugguGAUGAUGguggGACu -3'
miRNA:   3'- cUGGCCGCugUACC----CUGCUAUag--CUG- -5'
14215 3' -54.2 NC_003521.1 + 24190 0.68 0.963098
Target:  5'- aGCCgGGCGGCAUGGG-CGGaacGUCGuCc -3'
miRNA:   3'- cUGG-CCGCUGUACCCuGCUa--UAGCuG- -5'
14215 3' -54.2 NC_003521.1 + 88678 0.68 0.959681
Target:  5'- gGGCCGGCGGCccggcucgGGGACaaaGGUcUCGAg -3'
miRNA:   3'- -CUGGCCGCUGua------CCCUG---CUAuAGCUg -5'
14215 3' -54.2 NC_003521.1 + 196723 0.68 0.959681
Target:  5'- cACCGGCGGCGacggUGGuGGCGg---CGGCg -3'
miRNA:   3'- cUGGCCGCUGU----ACC-CUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 192835 0.68 0.956053
Target:  5'- -cCCGGCGGCGcguccGuGGACGAgaagCGACg -3'
miRNA:   3'- cuGGCCGCUGUa----C-CCUGCUaua-GCUG- -5'
14215 3' -54.2 NC_003521.1 + 77694 0.68 0.955679
Target:  5'- cGCUGGCGAagacagcCGUGGcGGCGuUGUUGGCg -3'
miRNA:   3'- cUGGCCGCU-------GUACC-CUGCuAUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 16797 0.68 0.948146
Target:  5'- uGCCGGCGcccauUAUGGGGCGcagauccgagAUCGAUg -3'
miRNA:   3'- cUGGCCGCu----GUACCCUGCua--------UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 111182 0.68 0.963098
Target:  5'- -cCCGGCGACGgcgccGcGGACGGUGggcugggCGAUg -3'
miRNA:   3'- cuGGCCGCUGUa----C-CCUGCUAUa------GCUG- -5'
14215 3' -54.2 NC_003521.1 + 207949 0.68 0.956053
Target:  5'- cACCGGCGGCGcGGG-CGccaaaccgAUCGGCc -3'
miRNA:   3'- cUGGCCGCUGUaCCCuGCua------UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 125713 0.68 0.948146
Target:  5'- cGCCGGCGGuCAcgacgGGGGCGg---CGACg -3'
miRNA:   3'- cUGGCCGCU-GUa----CCCUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 108275 0.68 0.948146
Target:  5'- aGAagaCGGCGGCAccgagggcggUGGuGGCGGUGaCGACg -3'
miRNA:   3'- -CUg--GCCGCUGU----------ACC-CUGCUAUaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.