miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 63615 1.11 0.005817
Target:  5'- cGACCGGCGACAUGGGACGAUAUCGACg -3'
miRNA:   3'- -CUGGCCGCUGUACCCUGCUAUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 47484 0.8 0.421887
Target:  5'- cGAgCGGCGACAUGGGaACGAaggCGACc -3'
miRNA:   3'- -CUgGCCGCUGUACCC-UGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 151448 0.79 0.466246
Target:  5'- cGugCGGCGACA-GGuGACGAUagcguGUCGACg -3'
miRNA:   3'- -CugGCCGCUGUaCC-CUGCUA-----UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 37666 0.78 0.503407
Target:  5'- uGCCGGCacgacgGGCAUGGGACGAUcgaucUCGGCu -3'
miRNA:   3'- cUGGCCG------CUGUACCCUGCUAu----AGCUG- -5'
14215 3' -54.2 NC_003521.1 + 1318 0.77 0.551553
Target:  5'- cGCCGGCGACGUGGcGCGGcugUAUCGGu -3'
miRNA:   3'- cUGGCCGCUGUACCcUGCU---AUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 201546 0.77 0.551553
Target:  5'- cGCCGGCGACGUGGcGCGGcugUAUCGGu -3'
miRNA:   3'- cUGGCCGCUGUACCcUGCU---AUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 223476 0.75 0.690766
Target:  5'- cGCCGGCGuCAcggcccgggaggUGGGGCGG-AUCGGCg -3'
miRNA:   3'- cUGGCCGCuGU------------ACCCUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 119782 0.75 0.650992
Target:  5'- gGACCGGCG-CAgcGGcGACGAgGUCGGCg -3'
miRNA:   3'- -CUGGCCGCuGUa-CC-CUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 82769 0.74 0.729792
Target:  5'- cGACCGGCGggccguggagcACA-GGGACGAgGUgGACg -3'
miRNA:   3'- -CUGGCCGC-----------UGUaCCCUGCUaUAgCUG- -5'
14215 3' -54.2 NC_003521.1 + 187489 0.74 0.729792
Target:  5'- cGCCGGCGugGUGGucacGACGAUc-CGACg -3'
miRNA:   3'- cUGGCCGCugUACC----CUGCUAuaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 103407 0.73 0.767525
Target:  5'- cGCUGGUGGCGUacaugaggucgGGGuuGAUGUCGACg -3'
miRNA:   3'- cUGGCCGCUGUA-----------CCCugCUAUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 128962 0.73 0.794647
Target:  5'- gGGCUGGCGGCGUGGcgcuggaaaaaGACGAUGcUgGGCa -3'
miRNA:   3'- -CUGGCCGCUGUACC-----------CUGCUAU-AgCUG- -5'
14215 3' -54.2 NC_003521.1 + 174060 0.72 0.827163
Target:  5'- gGGCCGGCGGCAUcacccgcGGGAUGucguccaGUcgCGGCa -3'
miRNA:   3'- -CUGGCCGCUGUA-------CCCUGC-------UAuaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 117696 0.72 0.803418
Target:  5'- cACCGuagacGCGACAUGauGGACGAUgcgccGUCGACg -3'
miRNA:   3'- cUGGC-----CGCUGUAC--CCUGCUA-----UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 100226 0.72 0.82881
Target:  5'- aGGCCGGCGAgGUGgagcuGGGCGAggugccCGACg -3'
miRNA:   3'- -CUGGCCGCUgUAC-----CCUGCUaua---GCUG- -5'
14215 3' -54.2 NC_003521.1 + 86228 0.71 0.884506
Target:  5'- cGCCGGCGGCcuugagcuccuugacGUGcaGGGCGAaGUCGGCc -3'
miRNA:   3'- cUGGCCGCUG---------------UAC--CCUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 122688 0.71 0.852666
Target:  5'- cGCCGGUGAuCAUGGG-CGuc-UCGGCg -3'
miRNA:   3'- cUGGCCGCU-GUACCCuGCuauAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 197276 0.71 0.852666
Target:  5'- cGCCGGCGGCG-GGGAgCGGgagggCGGCu -3'
miRNA:   3'- cUGGCCGCUGUaCCCU-GCUaua--GCUG- -5'
14215 3' -54.2 NC_003521.1 + 186927 0.71 0.844896
Target:  5'- cGCCGGUGGCG-GGGGCGg---CGGCg -3'
miRNA:   3'- cUGGCCGCUGUaCCCUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 49081 0.7 0.913382
Target:  5'- gGACCGuCgGACggGGGGCGAUAUCcACa -3'
miRNA:   3'- -CUGGCcG-CUGuaCCCUGCUAUAGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.