Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14215 | 3' | -54.2 | NC_003521.1 | + | 163229 | 0.7 | 0.913382 |
Target: 5'- -cCCGGUGACGUGGGuuCGGccaCGGCg -3' miRNA: 3'- cuGGCCGCUGUACCCu-GCUauaGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 186623 | 0.7 | 0.907505 |
Target: 5'- uACgCGGCGGCgGUGGuGGCGGcaaGUCGACg -3' miRNA: 3'- cUG-GCCGCUG-UACC-CUGCUa--UAGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 49081 | 0.7 | 0.913382 |
Target: 5'- gGACCGuCgGACggGGGGCGAUAUCcACa -3' miRNA: 3'- -CUGGCcG-CUGuaCCCUGCUAUAGcUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 18737 | 0.7 | 0.901403 |
Target: 5'- --gCGGCGAuCGUGGcGGCGGUGgcgcCGACg -3' miRNA: 3'- cugGCCGCU-GUACC-CUGCUAUa---GCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 216733 | 0.69 | 0.934612 |
Target: 5'- gGAUUGGCGGagagGGGAUGAgg-CGACg -3' miRNA: 3'- -CUGGCCGCUgua-CCCUGCUauaGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 209553 | 0.69 | 0.93935 |
Target: 5'- -cCCGGCGGgGUGGcGGCGAcggUGGCg -3' miRNA: 3'- cuGGCCGCUgUACC-CUGCUauaGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 6979 | 0.69 | 0.94342 |
Target: 5'- aGACCGGCGACGacgauaaUGGaACGGUAgaaGAUc -3' miRNA: 3'- -CUGGCCGCUGU-------ACCcUGCUAUag-CUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 238693 | 0.69 | 0.94386 |
Target: 5'- -gUCGGCGGcCGUGGGACG---UUGACc -3' miRNA: 3'- cuGGCCGCU-GUACCCUGCuauAGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 38466 | 0.69 | 0.94386 |
Target: 5'- -gUCGGCGGcCGUGGGACG---UUGACc -3' miRNA: 3'- cuGGCCGCU-GUACCCUGCuauAGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 35804 | 0.69 | 0.94386 |
Target: 5'- cGACuaCGGCGGCGUGGG-CGAgaaccUGGCg -3' miRNA: 3'- -CUG--GCCGCUGUACCCuGCUaua--GCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 186760 | 0.69 | 0.934126 |
Target: 5'- gGGCuCGGCGGCAUcggcggaGGcGGCGGUGguggCGGCg -3' miRNA: 3'- -CUG-GCCGCUGUA-------CC-CUGCUAUa---GCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 120968 | 0.69 | 0.94386 |
Target: 5'- gGACCGa-GGCccGGGugGAUAUcCGACg -3' miRNA: 3'- -CUGGCcgCUGuaCCCugCUAUA-GCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 204893 | 0.69 | 0.924454 |
Target: 5'- uGGCCGcGCGGC--GGGACGGUGgccgcCGAUg -3' miRNA: 3'- -CUGGC-CGCUGuaCCCUGCUAUa----GCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 43838 | 0.69 | 0.93935 |
Target: 5'- cACUGGCGACAccugcaggUGGGgagACGAUAaaGACa -3' miRNA: 3'- cUGGCCGCUGU--------ACCC---UGCUAUagCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 178797 | 0.69 | 0.93935 |
Target: 5'- gGACgGGCGagGCAUGcccggcGGGCGGgucgAUCGACg -3' miRNA: 3'- -CUGgCCGC--UGUAC------CCUGCUa---UAGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 95806 | 0.69 | 0.94386 |
Target: 5'- cGACCaGCG-CGUcGG-CGAUGUCGGCg -3' miRNA: 3'- -CUGGcCGCuGUAcCCuGCUAUAGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 88678 | 0.68 | 0.959681 |
Target: 5'- gGGCCGGCGGCccggcucgGGGACaaaGGUcUCGAg -3' miRNA: 3'- -CUGGCCGCUGua------CCCUG---CUAuAGCUg -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 111182 | 0.68 | 0.963098 |
Target: 5'- -cCCGGCGACGgcgccGcGGACGGUGggcugggCGAUg -3' miRNA: 3'- cuGGCCGCUGUa----C-CCUGCUAUa------GCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 24190 | 0.68 | 0.963098 |
Target: 5'- aGCCgGGCGGCAUGGG-CGGaacGUCGuCc -3' miRNA: 3'- cUGG-CCGCUGUACCCuGCUa--UAGCuG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 16797 | 0.68 | 0.948146 |
Target: 5'- uGCCGGCGcccauUAUGGGGCGcagauccgagAUCGAUg -3' miRNA: 3'- cUGGCCGCu----GUACCCUGCua--------UAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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