miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 18737 0.7 0.901403
Target:  5'- --gCGGCGAuCGUGGcGGCGGUGgcgcCGACg -3'
miRNA:   3'- cugGCCGCU-GUACC-CUGCUAUa---GCUG- -5'
14215 3' -54.2 NC_003521.1 + 186623 0.7 0.907505
Target:  5'- uACgCGGCGGCgGUGGuGGCGGcaaGUCGACg -3'
miRNA:   3'- cUG-GCCGCUG-UACC-CUGCUa--UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 49081 0.7 0.913382
Target:  5'- gGACCGuCgGACggGGGGCGAUAUCcACa -3'
miRNA:   3'- -CUGGCcG-CUGuaCCCUGCUAUAGcUG- -5'
14215 3' -54.2 NC_003521.1 + 163229 0.7 0.913382
Target:  5'- -cCCGGUGACGUGGGuuCGGccaCGGCg -3'
miRNA:   3'- cuGGCCGCUGUACCCu-GCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 204893 0.69 0.924454
Target:  5'- uGGCCGcGCGGC--GGGACGGUGgccgcCGAUg -3'
miRNA:   3'- -CUGGC-CGCUGuaCCCUGCUAUa----GCUG- -5'
14215 3' -54.2 NC_003521.1 + 186760 0.69 0.934126
Target:  5'- gGGCuCGGCGGCAUcggcggaGGcGGCGGUGguggCGGCg -3'
miRNA:   3'- -CUG-GCCGCUGUA-------CC-CUGCUAUa---GCUG- -5'
14215 3' -54.2 NC_003521.1 + 216733 0.69 0.934612
Target:  5'- gGAUUGGCGGagagGGGAUGAgg-CGACg -3'
miRNA:   3'- -CUGGCCGCUgua-CCCUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 43838 0.69 0.93935
Target:  5'- cACUGGCGACAccugcaggUGGGgagACGAUAaaGACa -3'
miRNA:   3'- cUGGCCGCUGU--------ACCC---UGCUAUagCUG- -5'
14215 3' -54.2 NC_003521.1 + 178797 0.69 0.93935
Target:  5'- gGACgGGCGagGCAUGcccggcGGGCGGgucgAUCGACg -3'
miRNA:   3'- -CUGgCCGC--UGUAC------CCUGCUa---UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 209553 0.69 0.93935
Target:  5'- -cCCGGCGGgGUGGcGGCGAcggUGGCg -3'
miRNA:   3'- cuGGCCGCUgUACC-CUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 6979 0.69 0.94342
Target:  5'- aGACCGGCGACGacgauaaUGGaACGGUAgaaGAUc -3'
miRNA:   3'- -CUGGCCGCUGU-------ACCcUGCUAUag-CUG- -5'
14215 3' -54.2 NC_003521.1 + 38466 0.69 0.94386
Target:  5'- -gUCGGCGGcCGUGGGACG---UUGACc -3'
miRNA:   3'- cuGGCCGCU-GUACCCUGCuauAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 120968 0.69 0.94386
Target:  5'- gGACCGa-GGCccGGGugGAUAUcCGACg -3'
miRNA:   3'- -CUGGCcgCUGuaCCCugCUAUA-GCUG- -5'
14215 3' -54.2 NC_003521.1 + 35804 0.69 0.94386
Target:  5'- cGACuaCGGCGGCGUGGG-CGAgaaccUGGCg -3'
miRNA:   3'- -CUG--GCCGCUGUACCCuGCUaua--GCUG- -5'
14215 3' -54.2 NC_003521.1 + 95806 0.69 0.94386
Target:  5'- cGACCaGCG-CGUcGG-CGAUGUCGGCg -3'
miRNA:   3'- -CUGGcCGCuGUAcCCuGCUAUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 238693 0.69 0.94386
Target:  5'- -gUCGGCGGcCGUGGGACG---UUGACc -3'
miRNA:   3'- cuGGCCGCU-GUACCCUGCuauAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 16797 0.68 0.948146
Target:  5'- uGCCGGCGcccauUAUGGGGCGcagauccgagAUCGAUg -3'
miRNA:   3'- cUGGCCGCu----GUACCCUGCua--------UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 43593 0.68 0.948146
Target:  5'- cGGgCGGCGACGaGGacGACGAgcgCGACg -3'
miRNA:   3'- -CUgGCCGCUGUaCC--CUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 165153 0.68 0.948146
Target:  5'- uGCCGGCGugAUGGugguGAUGAUGguggGACu -3'
miRNA:   3'- cUGGCCGCugUACC----CUGCUAUag--CUG- -5'
14215 3' -54.2 NC_003521.1 + 169004 0.68 0.948146
Target:  5'- aGGCgGGCGACG-GGGccggcACGAUcUUGACg -3'
miRNA:   3'- -CUGgCCGCUGUaCCC-----UGCUAuAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.