miRNA display CGI


Results 61 - 80 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 135242 0.67 0.969314
Target:  5'- cGCCGGCGGC--GGcGACGAcacggCGGCg -3'
miRNA:   3'- cUGGCCGCUGuaCC-CUGCUaua--GCUG- -5'
14215 3' -54.2 NC_003521.1 + 218715 0.67 0.972125
Target:  5'- --aCGGCGGCGgcgGcGGGCGAgaagCGGCg -3'
miRNA:   3'- cugGCCGCUGUa--C-CCUGCUaua-GCUG- -5'
14215 3' -54.2 NC_003521.1 + 111385 0.67 0.972125
Target:  5'- --gCGGCGACGgagGGGACGcgcugcagCGGCu -3'
miRNA:   3'- cugGCCGCUGUa--CCCUGCuaua----GCUG- -5'
14215 3' -54.2 NC_003521.1 + 36400 0.67 0.974236
Target:  5'- uGCUGGCGGCAgcgcGGGGCGuggauuucgcgGUCGGa -3'
miRNA:   3'- cUGGCCGCUGUa---CCCUGCua---------UAGCUg -5'
14215 3' -54.2 NC_003521.1 + 126711 0.67 0.974745
Target:  5'- uGCCGGUGAgCAgauccgaGGcGGCGcgGUCGGCg -3'
miRNA:   3'- cUGGCCGCU-GUa------CC-CUGCuaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 165447 0.67 0.977181
Target:  5'- uGACCa-CGACGUGGccccuGACGAUGUUGAg -3'
miRNA:   3'- -CUGGccGCUGUACC-----CUGCUAUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 198457 0.67 0.977181
Target:  5'- uGGCCGuCGGCu---GGCGGUGUCGACa -3'
miRNA:   3'- -CUGGCcGCUGuaccCUGCUAUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 218091 0.67 0.977181
Target:  5'- --gCGGCGGCGccGGuGACGAUGagGGCg -3'
miRNA:   3'- cugGCCGCUGUa-CC-CUGCUAUagCUG- -5'
14215 3' -54.2 NC_003521.1 + 31703 0.66 0.978781
Target:  5'- gGGgCGGCGGCAgcaugugcgcgugcUGGGACGccg-CGGCc -3'
miRNA:   3'- -CUgGCCGCUGU--------------ACCCUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 182181 0.66 0.97944
Target:  5'- cGGCCGGCG-CGUGGGGau---UCaGACa -3'
miRNA:   3'- -CUGGCCGCuGUACCCUgcuauAG-CUG- -5'
14215 3' -54.2 NC_003521.1 + 98633 0.66 0.97944
Target:  5'- aGAgCGGCGGCGgcgGuaGCGGcGUCGACg -3'
miRNA:   3'- -CUgGCCGCUGUa--CccUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 51167 0.66 0.980919
Target:  5'- aACCGGCuuugguccagucccGAUAcGuGGACGAUGUCGGu -3'
miRNA:   3'- cUGGCCG--------------CUGUaC-CCUGCUAUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 137530 0.66 0.981528
Target:  5'- uACCGGCG-CGUGGuggccuacGACGAga-CGGCg -3'
miRNA:   3'- cUGGCCGCuGUACC--------CUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 84422 0.66 0.981528
Target:  5'- uGACCaGCGGCAgGGuGGCGAag-CGGCc -3'
miRNA:   3'- -CUGGcCGCUGUaCC-CUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 212888 0.66 0.981528
Target:  5'- cGCgGGCGACggGGGuguCGGUGgacUCGAg -3'
miRNA:   3'- cUGgCCGCUGuaCCCu--GCUAU---AGCUg -5'
14215 3' -54.2 NC_003521.1 + 52300 0.66 0.981528
Target:  5'- --aUGGCGACGUGGGGCccgc-CGGCc -3'
miRNA:   3'- cugGCCGCUGUACCCUGcuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 69401 0.66 0.983454
Target:  5'- aGACgCaGCaGACGcGGGACGGUGaCGGCg -3'
miRNA:   3'- -CUG-GcCG-CUGUaCCCUGCUAUaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 86715 0.66 0.983454
Target:  5'- cGGCC-GCGAgAUGGGcCGGUucUUGACg -3'
miRNA:   3'- -CUGGcCGCUgUACCCuGCUAu-AGCUG- -5'
14215 3' -54.2 NC_003521.1 + 187897 0.66 0.983454
Target:  5'- cACgGGCGGCG-GGGGCag-GUCGAUc -3'
miRNA:   3'- cUGgCCGCUGUaCCCUGcuaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 133762 0.66 0.983454
Target:  5'- -cCCGGCGAUuccgGGGACG----CGGCg -3'
miRNA:   3'- cuGGCCGCUGua--CCCUGCuauaGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.