miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 49081 0.7 0.913382
Target:  5'- gGACCGuCgGACggGGGGCGAUAUCcACa -3'
miRNA:   3'- -CUGGCcG-CUGuaCCCUGCUAUAGcUG- -5'
14215 3' -54.2 NC_003521.1 + 49606 0.68 0.963098
Target:  5'- cACCGGCGcug-GGGACGcgGagGACa -3'
miRNA:   3'- cUGGCCGCuguaCCCUGCuaUagCUG- -5'
14215 3' -54.2 NC_003521.1 + 51167 0.66 0.980919
Target:  5'- aACCGGCuuugguccagucccGAUAcGuGGACGAUGUCGGu -3'
miRNA:   3'- cUGGCCG--------------CUGUaC-CCUGCUAUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 52300 0.66 0.981528
Target:  5'- --aUGGCGACGUGGGGCccgc-CGGCc -3'
miRNA:   3'- cugGCCGCUGUACCCUGcuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 53394 0.68 0.956053
Target:  5'- aGGCCgcGGCGAgCAgGGGAUGGcgcGUCGGCa -3'
miRNA:   3'- -CUGG--CCGCU-GUaCCCUGCUa--UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 54498 0.66 0.985223
Target:  5'- uGGCCGGCGGCccGGcGugGAccaggAUCuGCa -3'
miRNA:   3'- -CUGGCCGCUGuaCC-CugCUa----UAGcUG- -5'
14215 3' -54.2 NC_003521.1 + 63615 1.11 0.005817
Target:  5'- cGACCGGCGACAUGGGACGAUAUCGACg -3'
miRNA:   3'- -CUGGCCGCUGUACCCUGCUAUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 69116 0.66 0.985223
Target:  5'- cGCCGGCGACGU--GACGuuguuUGUCGuCa -3'
miRNA:   3'- cUGGCCGCUGUAccCUGCu----AUAGCuG- -5'
14215 3' -54.2 NC_003521.1 + 69401 0.66 0.983454
Target:  5'- aGACgCaGCaGACGcGGGACGGUGaCGGCg -3'
miRNA:   3'- -CUG-GcCG-CUGUaCCCUGCUAUaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 69782 0.66 0.986844
Target:  5'- --aCGGCGACGaGGGAgCGGccGUCGAg -3'
miRNA:   3'- cugGCCGCUGUaCCCU-GCUa-UAGCUg -5'
14215 3' -54.2 NC_003521.1 + 70366 0.68 0.956053
Target:  5'- -gUCGGCGACAugacUGGGGCGcgAgggGACa -3'
miRNA:   3'- cuGGCCGCUGU----ACCCUGCuaUag-CUG- -5'
14215 3' -54.2 NC_003521.1 + 71860 0.68 0.959681
Target:  5'- -gUCGGCGACAgcagcGGGAgCGAcggCGACa -3'
miRNA:   3'- cuGGCCGCUGUa----CCCU-GCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 73201 0.66 0.988325
Target:  5'- aGACCcccGCGA-AUGGGACGA---CGACg -3'
miRNA:   3'- -CUGGc--CGCUgUACCCUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 76326 0.66 0.988325
Target:  5'- --gCGGCGACAgcugcggaGGcGACGGUGaCGGCu -3'
miRNA:   3'- cugGCCGCUGUa-------CC-CUGCUAUaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 77694 0.68 0.955679
Target:  5'- cGCUGGCGAagacagcCGUGGcGGCGuUGUUGGCg -3'
miRNA:   3'- cUGGCCGCU-------GUACC-CUGCuAUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 82769 0.74 0.729792
Target:  5'- cGACCGGCGggccguggagcACA-GGGACGAgGUgGACg -3'
miRNA:   3'- -CUGGCCGC-----------UGUaCCCUGCUaUAgCUG- -5'
14215 3' -54.2 NC_003521.1 + 84422 0.66 0.981528
Target:  5'- uGACCaGCGGCAgGGuGGCGAag-CGGCc -3'
miRNA:   3'- -CUGGcCGCUGUaCC-CUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 86228 0.71 0.884506
Target:  5'- cGCCGGCGGCcuugagcuccuugacGUGcaGGGCGAaGUCGGCc -3'
miRNA:   3'- cUGGCCGCUG---------------UAC--CCUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 86709 0.66 0.988325
Target:  5'- --gCGGCGACGacGaGGCGGUgAUCGACa -3'
miRNA:   3'- cugGCCGCUGUacC-CUGCUA-UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 86715 0.66 0.983454
Target:  5'- cGGCC-GCGAgAUGGGcCGGUucUUGACg -3'
miRNA:   3'- -CUGGcCGCUgUACCCuGCUAu-AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.