miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 88678 0.68 0.959681
Target:  5'- gGGCCGGCGGCccggcucgGGGACaaaGGUcUCGAg -3'
miRNA:   3'- -CUGGCCGCUGua------CCCUG---CUAuAGCUg -5'
14215 3' -54.2 NC_003521.1 + 95806 0.69 0.94386
Target:  5'- cGACCaGCG-CGUcGG-CGAUGUCGGCg -3'
miRNA:   3'- -CUGGcCGCuGUAcCCuGCUAUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 98633 0.66 0.97944
Target:  5'- aGAgCGGCGGCGgcgGuaGCGGcGUCGACg -3'
miRNA:   3'- -CUgGCCGCUGUa--CccUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 100226 0.72 0.82881
Target:  5'- aGGCCGGCGAgGUGgagcuGGGCGAggugccCGACg -3'
miRNA:   3'- -CUGGCCGCUgUAC-----CCUGCUaua---GCUG- -5'
14215 3' -54.2 NC_003521.1 + 103407 0.73 0.767525
Target:  5'- cGCUGGUGGCGUacaugaggucgGGGuuGAUGUCGACg -3'
miRNA:   3'- cUGGCCGCUGUA-----------CCCugCUAUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 106606 0.67 0.969314
Target:  5'- gGACC-GUGAgcauCGUGGGACGAUgccaaaggcgAUCGAUa -3'
miRNA:   3'- -CUGGcCGCU----GUACCCUGCUA----------UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 108032 0.66 0.985223
Target:  5'- cGGCgucaGGCGGCGgcGGGAUGAcg-CGACg -3'
miRNA:   3'- -CUGg---CCGCUGUa-CCCUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 108275 0.68 0.948146
Target:  5'- aGAagaCGGCGGCAccgagggcggUGGuGGCGGUGaCGACg -3'
miRNA:   3'- -CUg--GCCGCUGU----------ACC-CUGCUAUaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 111182 0.68 0.963098
Target:  5'- -cCCGGCGACGgcgccGcGGACGGUGggcugggCGAUg -3'
miRNA:   3'- cuGGCCGCUGUa----C-CCUGCUAUa------GCUG- -5'
14215 3' -54.2 NC_003521.1 + 111385 0.67 0.972125
Target:  5'- --gCGGCGACGgagGGGACGcgcugcagCGGCu -3'
miRNA:   3'- cugGCCGCUGUa--CCCUGCuaua----GCUG- -5'
14215 3' -54.2 NC_003521.1 + 113856 0.68 0.956053
Target:  5'- cGGCCGGCGACGacGGcGCGGguuccgCGGCg -3'
miRNA:   3'- -CUGGCCGCUGUacCC-UGCUaua---GCUG- -5'
14215 3' -54.2 NC_003521.1 + 116460 0.67 0.969314
Target:  5'- cGACgCGGcCGugGUGGGACacGUggCGGCg -3'
miRNA:   3'- -CUG-GCC-GCugUACCCUGc-UAuaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 117696 0.72 0.803418
Target:  5'- cACCGuagacGCGACAUGauGGACGAUgcgccGUCGACg -3'
miRNA:   3'- cUGGC-----CGCUGUAC--CCUGCUA-----UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 119782 0.75 0.650992
Target:  5'- gGACCGGCG-CAgcGGcGACGAgGUCGGCg -3'
miRNA:   3'- -CUGGCCGCuGUa-CC-CUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 120968 0.69 0.94386
Target:  5'- gGACCGa-GGCccGGGugGAUAUcCGACg -3'
miRNA:   3'- -CUGGCcgCUGuaCCCugCUAUA-GCUG- -5'
14215 3' -54.2 NC_003521.1 + 122688 0.71 0.852666
Target:  5'- cGCCGGUGAuCAUGGG-CGuc-UCGGCg -3'
miRNA:   3'- cUGGCCGCU-GUACCCuGCuauAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 125713 0.68 0.948146
Target:  5'- cGCCGGCGGuCAcgacgGGGGCGg---CGACg -3'
miRNA:   3'- cUGGCCGCU-GUa----CCCUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 126393 0.66 0.988325
Target:  5'- cGGCCgucagGGCGAagcccGGGugGAUGUgGGCc -3'
miRNA:   3'- -CUGG-----CCGCUgua--CCCugCUAUAgCUG- -5'
14215 3' -54.2 NC_003521.1 + 126711 0.67 0.974745
Target:  5'- uGCCGGUGAgCAgauccgaGGcGGCGcgGUCGGCg -3'
miRNA:   3'- cUGGCCGCU-GUa------CC-CUGCuaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 128962 0.73 0.794647
Target:  5'- gGGCUGGCGGCGUGGcgcuggaaaaaGACGAUGcUgGGCa -3'
miRNA:   3'- -CUGGCCGCUGUACC-----------CUGCUAU-AgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.