miRNA display CGI


Results 61 - 80 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 133762 0.66 0.983454
Target:  5'- -cCCGGCGAUuccgGGGACG----CGGCg -3'
miRNA:   3'- cuGGCCGCUGua--CCCUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 135242 0.67 0.969314
Target:  5'- cGCCGGCGGC--GGcGACGAcacggCGGCg -3'
miRNA:   3'- cUGGCCGCUGuaCC-CUGCUaua--GCUG- -5'
14215 3' -54.2 NC_003521.1 + 135324 0.66 0.986844
Target:  5'- aGAgCGGU-ACAccacUGGGACGucGUCGACa -3'
miRNA:   3'- -CUgGCCGcUGU----ACCCUGCuaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 137530 0.66 0.981528
Target:  5'- uACCGGCG-CGUGGuggccuacGACGAga-CGGCg -3'
miRNA:   3'- cUGGCCGCuGUACC--------CUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 148173 0.66 0.983454
Target:  5'- cGACCGGgGGgAUGGGACcc--UCGGu -3'
miRNA:   3'- -CUGGCCgCUgUACCCUGcuauAGCUg -5'
14215 3' -54.2 NC_003521.1 + 151448 0.79 0.466246
Target:  5'- cGugCGGCGACA-GGuGACGAUagcguGUCGACg -3'
miRNA:   3'- -CugGCCGCUGUaCC-CUGCUA-----UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 162245 0.68 0.963098
Target:  5'- cGCUGGCGGgGUGGGcgucaACGGgggugCGACa -3'
miRNA:   3'- cUGGCCGCUgUACCC-----UGCUaua--GCUG- -5'
14215 3' -54.2 NC_003521.1 + 163229 0.7 0.913382
Target:  5'- -cCCGGUGACGUGGGuuCGGccaCGGCg -3'
miRNA:   3'- cuGGCCGCUGUACCCu-GCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 165153 0.68 0.948146
Target:  5'- uGCCGGCGugAUGGugguGAUGAUGguggGACu -3'
miRNA:   3'- cUGGCCGCugUACC----CUGCUAUag--CUG- -5'
14215 3' -54.2 NC_003521.1 + 165447 0.67 0.977181
Target:  5'- uGACCa-CGACGUGGccccuGACGAUGUUGAg -3'
miRNA:   3'- -CUGGccGCUGUACC-----CUGCUAUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 169004 0.68 0.948146
Target:  5'- aGGCgGGCGACG-GGGccggcACGAUcUUGACg -3'
miRNA:   3'- -CUGgCCGCUGUaCCC-----UGCUAuAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 174060 0.72 0.827163
Target:  5'- gGGCCGGCGGCAUcacccgcGGGAUGucguccaGUcgCGGCa -3'
miRNA:   3'- -CUGGCCGCUGUA-------CCCUGC-------UAuaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 178797 0.69 0.93935
Target:  5'- gGACgGGCGagGCAUGcccggcGGGCGGgucgAUCGACg -3'
miRNA:   3'- -CUGgCCGC--UGUAC------CCUGCUa---UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 179055 0.68 0.956053
Target:  5'- aGCCGGCGGCGgucccGGuGACGGggaaCGGCu -3'
miRNA:   3'- cUGGCCGCUGUa----CC-CUGCUaua-GCUG- -5'
14215 3' -54.2 NC_003521.1 + 182181 0.66 0.97944
Target:  5'- cGGCCGGCG-CGUGGGGau---UCaGACa -3'
miRNA:   3'- -CUGGCCGCuGUACCCUgcuauAG-CUG- -5'
14215 3' -54.2 NC_003521.1 + 182837 0.66 0.985053
Target:  5'- cGAUCGGCGGCGcUGacaacagcagcgaGGACGAUGaUGAUa -3'
miRNA:   3'- -CUGGCCGCUGU-AC-------------CCUGCUAUaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 183430 0.66 0.985223
Target:  5'- cGCaCGGCGcUGUGGcGCGAgAUCGACg -3'
miRNA:   3'- cUG-GCCGCuGUACCcUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 186623 0.7 0.907505
Target:  5'- uACgCGGCGGCgGUGGuGGCGGcaaGUCGACg -3'
miRNA:   3'- cUG-GCCGCUG-UACC-CUGCUa--UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 186760 0.69 0.934126
Target:  5'- gGGCuCGGCGGCAUcggcggaGGcGGCGGUGguggCGGCg -3'
miRNA:   3'- -CUG-GCCGCUGUA-------CC-CUGCUAUa---GCUG- -5'
14215 3' -54.2 NC_003521.1 + 186927 0.71 0.844896
Target:  5'- cGCCGGUGGCG-GGGGCGg---CGGCg -3'
miRNA:   3'- cUGGCCGCUGUaCCCUGCuauaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.