miRNA display CGI


Results 81 - 100 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 187489 0.74 0.729792
Target:  5'- cGCCGGCGugGUGGucacGACGAUc-CGACg -3'
miRNA:   3'- cUGGCCGCugUACC----CUGCUAuaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 187897 0.66 0.983454
Target:  5'- cACgGGCGGCG-GGGGCag-GUCGAUc -3'
miRNA:   3'- cUGgCCGCUGUaCCCUGcuaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 192835 0.68 0.956053
Target:  5'- -cCCGGCGGCGcguccGuGGACGAgaagCGACg -3'
miRNA:   3'- cuGGCCGCUGUa----C-CCUGCUaua-GCUG- -5'
14215 3' -54.2 NC_003521.1 + 196723 0.68 0.959681
Target:  5'- cACCGGCGGCGacggUGGuGGCGg---CGGCg -3'
miRNA:   3'- cUGGCCGCUGU----ACC-CUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 197276 0.71 0.852666
Target:  5'- cGCCGGCGGCG-GGGAgCGGgagggCGGCu -3'
miRNA:   3'- cUGGCCGCUGUaCCCU-GCUaua--GCUG- -5'
14215 3' -54.2 NC_003521.1 + 198457 0.67 0.977181
Target:  5'- uGGCCGuCGGCu---GGCGGUGUCGACa -3'
miRNA:   3'- -CUGGCcGCUGuaccCUGCUAUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 201546 0.77 0.551553
Target:  5'- cGCCGGCGACGUGGcGCGGcugUAUCGGu -3'
miRNA:   3'- cUGGCCGCUGUACCcUGCU---AUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 204893 0.69 0.924454
Target:  5'- uGGCCGcGCGGC--GGGACGGUGgccgcCGAUg -3'
miRNA:   3'- -CUGGC-CGCUGuaCCCUGCUAUa----GCUG- -5'
14215 3' -54.2 NC_003521.1 + 205220 0.66 0.986844
Target:  5'- gGGCCGGCaGGCGgaucagGGGACcc-AUCGAa -3'
miRNA:   3'- -CUGGCCG-CUGUa-----CCCUGcuaUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 207949 0.68 0.956053
Target:  5'- cACCGGCGGCGcGGG-CGccaaaccgAUCGGCc -3'
miRNA:   3'- cUGGCCGCUGUaCCCuGCua------UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 209553 0.69 0.93935
Target:  5'- -cCCGGCGGgGUGGcGGCGAcggUGGCg -3'
miRNA:   3'- cuGGCCGCUgUACC-CUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 212888 0.66 0.981528
Target:  5'- cGCgGGCGACggGGGuguCGGUGgacUCGAg -3'
miRNA:   3'- cUGgCCGCUGuaCCCu--GCUAU---AGCUg -5'
14215 3' -54.2 NC_003521.1 + 213596 0.66 0.987453
Target:  5'- aGCCGGCGAUgaccaggcuguugGGGugGcgGUCGcCg -3'
miRNA:   3'- cUGGCCGCUGua-----------CCCugCuaUAGCuG- -5'
14215 3' -54.2 NC_003521.1 + 216294 0.66 0.986844
Target:  5'- gGAgCGGaCGACGUuggcgGGGGUGAUGUCGGg -3'
miRNA:   3'- -CUgGCC-GCUGUA-----CCCUGCUAUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 216733 0.69 0.934612
Target:  5'- gGAUUGGCGGagagGGGAUGAgg-CGACg -3'
miRNA:   3'- -CUGGCCGCUgua-CCCUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 216912 0.66 0.985223
Target:  5'- gGGCgCGGUGGCAgcGGAgGcgGUCGACc -3'
miRNA:   3'- -CUG-GCCGCUGUacCCUgCuaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 218091 0.67 0.977181
Target:  5'- --gCGGCGGCGccGGuGACGAUGagGGCg -3'
miRNA:   3'- cugGCCGCUGUa-CC-CUGCUAUagCUG- -5'
14215 3' -54.2 NC_003521.1 + 218715 0.67 0.972125
Target:  5'- --aCGGCGGCGgcgGcGGGCGAgaagCGGCg -3'
miRNA:   3'- cugGCCGCUGUa--C-CCUGCUaua-GCUG- -5'
14215 3' -54.2 NC_003521.1 + 223476 0.75 0.690766
Target:  5'- cGCCGGCGuCAcggcccgggaggUGGGGCGG-AUCGGCg -3'
miRNA:   3'- cUGGCCGCuGU------------ACCCUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 238693 0.69 0.94386
Target:  5'- -gUCGGCGGcCGUGGGACG---UUGACc -3'
miRNA:   3'- cuGGCCGCU-GUACCCUGCuauAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.