miRNA display CGI


Results 81 - 100 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 48716 0.66 0.985223
Target:  5'- aGGCCGGgaGAgGUGGaGACGccggCGACg -3'
miRNA:   3'- -CUGGCCg-CUgUACC-CUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 47484 0.8 0.421887
Target:  5'- cGAgCGGCGACAUGGGaACGAaggCGACc -3'
miRNA:   3'- -CUgGCCGCUGUACCC-UGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 44392 0.66 0.983454
Target:  5'- aGCCGGcCGACccGGG-CGAcagCGACu -3'
miRNA:   3'- cUGGCC-GCUGuaCCCuGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 43838 0.69 0.93935
Target:  5'- cACUGGCGACAccugcaggUGGGgagACGAUAaaGACa -3'
miRNA:   3'- cUGGCCGCUGU--------ACCC---UGCUAUagCUG- -5'
14215 3' -54.2 NC_003521.1 + 43593 0.68 0.948146
Target:  5'- cGGgCGGCGACGaGGacGACGAgcgCGACg -3'
miRNA:   3'- -CUgGCCGCUGUaCC--CUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 42556 0.66 0.986844
Target:  5'- uGCUGGUGcCGcUGGGACGGcUAUCGcuGCg -3'
miRNA:   3'- cUGGCCGCuGU-ACCCUGCU-AUAGC--UG- -5'
14215 3' -54.2 NC_003521.1 + 38466 0.69 0.94386
Target:  5'- -gUCGGCGGcCGUGGGACG---UUGACc -3'
miRNA:   3'- cuGGCCGCU-GUACCCUGCuauAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 38284 0.66 0.986844
Target:  5'- aGGCCGGCGcGCAgcaGGuGCGAgagcucGUCGGCc -3'
miRNA:   3'- -CUGGCCGC-UGUa--CCcUGCUa-----UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 37666 0.78 0.503407
Target:  5'- uGCCGGCacgacgGGCAUGGGACGAUcgaucUCGGCu -3'
miRNA:   3'- cUGGCCG------CUGUACCCUGCUAu----AGCUG- -5'
14215 3' -54.2 NC_003521.1 + 36400 0.67 0.974236
Target:  5'- uGCUGGCGGCAgcgcGGGGCGuggauuucgcgGUCGGa -3'
miRNA:   3'- cUGGCCGCUGUa---CCCUGCua---------UAGCUg -5'
14215 3' -54.2 NC_003521.1 + 35804 0.69 0.94386
Target:  5'- cGACuaCGGCGGCGUGGG-CGAgaaccUGGCg -3'
miRNA:   3'- -CUG--GCCGCUGUACCCuGCUaua--GCUG- -5'
14215 3' -54.2 NC_003521.1 + 34080 0.68 0.948146
Target:  5'- -gUCGGCGGCAgucGGCGAUAUCGcGCg -3'
miRNA:   3'- cuGGCCGCUGUaccCUGCUAUAGC-UG- -5'
14215 3' -54.2 NC_003521.1 + 31703 0.66 0.978781
Target:  5'- gGGgCGGCGGCAgcaugugcgcgugcUGGGACGccg-CGGCc -3'
miRNA:   3'- -CUgGCCGCUGU--------------ACCCUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 24190 0.68 0.963098
Target:  5'- aGCCgGGCGGCAUGGG-CGGaacGUCGuCc -3'
miRNA:   3'- cUGG-CCGCUGUACCCuGCUa--UAGCuG- -5'
14215 3' -54.2 NC_003521.1 + 18737 0.7 0.901403
Target:  5'- --gCGGCGAuCGUGGcGGCGGUGgcgcCGACg -3'
miRNA:   3'- cugGCCGCU-GUACC-CUGCUAUa---GCUG- -5'
14215 3' -54.2 NC_003521.1 + 17807 0.7 0.895079
Target:  5'- uGGCCGuGCGACcgGcGGACGA---CGACc -3'
miRNA:   3'- -CUGGC-CGCUGuaC-CCUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 16797 0.68 0.948146
Target:  5'- uGCCGGCGcccauUAUGGGGCGcagauccgagAUCGAUg -3'
miRNA:   3'- cUGGCCGCu----GUACCCUGCua--------UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 6979 0.69 0.94342
Target:  5'- aGACCGGCGACGacgauaaUGGaACGGUAgaaGAUc -3'
miRNA:   3'- -CUGGCCGCUGU-------ACCcUGCUAUag-CUG- -5'
14215 3' -54.2 NC_003521.1 + 5646 0.67 0.969314
Target:  5'- gGACCcacauGGCGGCGgaGGGugGGggGUCGAg -3'
miRNA:   3'- -CUGG-----CCGCUGUa-CCCugCUa-UAGCUg -5'
14215 3' -54.2 NC_003521.1 + 1318 0.77 0.551553
Target:  5'- cGCCGGCGACGUGGcGCGGcugUAUCGGu -3'
miRNA:   3'- cUGGCCGCUGUACCcUGCU---AUAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.