miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 88678 0.68 0.959681
Target:  5'- gGGCCGGCGGCccggcucgGGGACaaaGGUcUCGAg -3'
miRNA:   3'- -CUGGCCGCUGua------CCCUG---CUAuAGCUg -5'
14215 3' -54.2 NC_003521.1 + 196723 0.68 0.959681
Target:  5'- cACCGGCGGCGacggUGGuGGCGg---CGGCg -3'
miRNA:   3'- cUGGCCGCUGU----ACC-CUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 18737 0.7 0.901403
Target:  5'- --gCGGCGAuCGUGGcGGCGGUGgcgcCGACg -3'
miRNA:   3'- cugGCCGCU-GUACC-CUGCUAUa---GCUG- -5'
14215 3' -54.2 NC_003521.1 + 86228 0.71 0.884506
Target:  5'- cGCCGGCGGCcuugagcuccuugacGUGcaGGGCGAaGUCGGCc -3'
miRNA:   3'- cUGGCCGCUG---------------UAC--CCUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 100226 0.72 0.82881
Target:  5'- aGGCCGGCGAgGUGgagcuGGGCGAggugccCGACg -3'
miRNA:   3'- -CUGGCCGCUgUAC-----CCUGCUaua---GCUG- -5'
14215 3' -54.2 NC_003521.1 + 117696 0.72 0.803418
Target:  5'- cACCGuagacGCGACAUGauGGACGAUgcgccGUCGACg -3'
miRNA:   3'- cUGGC-----CGCUGUAC--CCUGCUA-----UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 187489 0.74 0.729792
Target:  5'- cGCCGGCGugGUGGucacGACGAUc-CGACg -3'
miRNA:   3'- cUGGCCGCugUACC----CUGCUAuaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 82769 0.74 0.729792
Target:  5'- cGACCGGCGggccguggagcACA-GGGACGAgGUgGACg -3'
miRNA:   3'- -CUGGCCGC-----------UGUaCCCUGCUaUAgCUG- -5'
14215 3' -54.2 NC_003521.1 + 223476 0.75 0.690766
Target:  5'- cGCCGGCGuCAcggcccgggaggUGGGGCGG-AUCGGCg -3'
miRNA:   3'- cUGGCCGCuGU------------ACCCUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 201546 0.77 0.551553
Target:  5'- cGCCGGCGACGUGGcGCGGcugUAUCGGu -3'
miRNA:   3'- cUGGCCGCUGUACCcUGCU---AUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 49081 0.7 0.913382
Target:  5'- gGACCGuCgGACggGGGGCGAUAUCcACa -3'
miRNA:   3'- -CUGGCcG-CUGuaCCCUGCUAUAGcUG- -5'
14215 3' -54.2 NC_003521.1 + 216733 0.69 0.934612
Target:  5'- gGAUUGGCGGagagGGGAUGAgg-CGACg -3'
miRNA:   3'- -CUGGCCGCUgua-CCCUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 192835 0.68 0.956053
Target:  5'- -cCCGGCGGCGcguccGuGGACGAgaagCGACg -3'
miRNA:   3'- cuGGCCGCUGUa----C-CCUGCUaua-GCUG- -5'
14215 3' -54.2 NC_003521.1 + 77694 0.68 0.955679
Target:  5'- cGCUGGCGAagacagcCGUGGcGGCGuUGUUGGCg -3'
miRNA:   3'- cUGGCCGCU-------GUACC-CUGCuAUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 43593 0.68 0.948146
Target:  5'- cGGgCGGCGACGaGGacGACGAgcgCGACg -3'
miRNA:   3'- -CUgGCCGCUGUaCC--CUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 169004 0.68 0.948146
Target:  5'- aGGCgGGCGACG-GGGccggcACGAUcUUGACg -3'
miRNA:   3'- -CUGgCCGCUGUaCCC-----UGCUAuAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 16797 0.68 0.948146
Target:  5'- uGCCGGCGcccauUAUGGGGCGcagauccgagAUCGAUg -3'
miRNA:   3'- cUGGCCGCu----GUACCCUGCua--------UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 238693 0.69 0.94386
Target:  5'- -gUCGGCGGcCGUGGGACG---UUGACc -3'
miRNA:   3'- cuGGCCGCU-GUACCCUGCuauAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 6979 0.69 0.94342
Target:  5'- aGACCGGCGACGacgauaaUGGaACGGUAgaaGAUc -3'
miRNA:   3'- -CUGGCCGCUGU-------ACCcUGCUAUag-CUG- -5'
14215 3' -54.2 NC_003521.1 + 209553 0.69 0.93935
Target:  5'- -cCCGGCGGgGUGGcGGCGAcggUGGCg -3'
miRNA:   3'- cuGGCCGCUgUACC-CUGCUauaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.