miRNA display CGI


Results 61 - 80 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 135242 0.67 0.969314
Target:  5'- cGCCGGCGGC--GGcGACGAcacggCGGCg -3'
miRNA:   3'- cUGGCCGCUGuaCC-CUGCUaua--GCUG- -5'
14215 3' -54.2 NC_003521.1 + 36400 0.67 0.974236
Target:  5'- uGCUGGCGGCAgcgcGGGGCGuggauuucgcgGUCGGa -3'
miRNA:   3'- cUGGCCGCUGUa---CCCUGCua---------UAGCUg -5'
14215 3' -54.2 NC_003521.1 + 35804 0.69 0.94386
Target:  5'- cGACuaCGGCGGCGUGGG-CGAgaaccUGGCg -3'
miRNA:   3'- -CUG--GCCGCUGUACCCuGCUaua--GCUG- -5'
14215 3' -54.2 NC_003521.1 + 178797 0.69 0.93935
Target:  5'- gGACgGGCGagGCAUGcccggcGGGCGGgucgAUCGACg -3'
miRNA:   3'- -CUGgCCGC--UGUAC------CCUGCUa---UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 47484 0.8 0.421887
Target:  5'- cGAgCGGCGACAUGGGaACGAaggCGACc -3'
miRNA:   3'- -CUgGCCGCUGUACCC-UGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 37666 0.78 0.503407
Target:  5'- uGCCGGCacgacgGGCAUGGGACGAUcgaucUCGGCu -3'
miRNA:   3'- cUGGCCG------CUGUACCCUGCUAu----AGCUG- -5'
14215 3' -54.2 NC_003521.1 + 1318 0.77 0.551553
Target:  5'- cGCCGGCGACGUGGcGCGGcugUAUCGGu -3'
miRNA:   3'- cUGGCCGCUGUACCcUGCU---AUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 119782 0.75 0.650992
Target:  5'- gGACCGGCG-CAgcGGcGACGAgGUCGGCg -3'
miRNA:   3'- -CUGGCCGCuGUa-CC-CUGCUaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 103407 0.73 0.767525
Target:  5'- cGCUGGUGGCGUacaugaggucgGGGuuGAUGUCGACg -3'
miRNA:   3'- cUGGCCGCUGUA-----------CCCugCUAUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 128962 0.73 0.794647
Target:  5'- gGGCUGGCGGCGUGGcgcuggaaaaaGACGAUGcUgGGCa -3'
miRNA:   3'- -CUGGCCGCUGUACC-----------CUGCUAU-AgCUG- -5'
14215 3' -54.2 NC_003521.1 + 174060 0.72 0.827163
Target:  5'- gGGCCGGCGGCAUcacccgcGGGAUGucguccaGUcgCGGCa -3'
miRNA:   3'- -CUGGCCGCUGUA-------CCCUGC-------UAuaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 186927 0.71 0.844896
Target:  5'- cGCCGGUGGCG-GGGGCGg---CGGCg -3'
miRNA:   3'- cUGGCCGCUGUaCCCUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 122688 0.71 0.852666
Target:  5'- cGCCGGUGAuCAUGGG-CGuc-UCGGCg -3'
miRNA:   3'- cUGGCCGCU-GUACCCuGCuauAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 197276 0.71 0.852666
Target:  5'- cGCCGGCGGCG-GGGAgCGGgagggCGGCu -3'
miRNA:   3'- cUGGCCGCUGUaCCCU-GCUaua--GCUG- -5'
14215 3' -54.2 NC_003521.1 + 17807 0.7 0.895079
Target:  5'- uGGCCGuGCGACcgGcGGACGA---CGACc -3'
miRNA:   3'- -CUGGC-CGCUGuaC-CCUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 186623 0.7 0.907505
Target:  5'- uACgCGGCGGCgGUGGuGGCGGcaaGUCGACg -3'
miRNA:   3'- cUG-GCCGCUG-UACC-CUGCUa--UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 163229 0.7 0.913382
Target:  5'- -cCCGGUGACGUGGGuuCGGccaCGGCg -3'
miRNA:   3'- cuGGCCGCUGUACCCu-GCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 204893 0.69 0.924454
Target:  5'- uGGCCGcGCGGC--GGGACGGUGgccgcCGAUg -3'
miRNA:   3'- -CUGGC-CGCUGuaCCCUGCUAUa----GCUG- -5'
14215 3' -54.2 NC_003521.1 + 186760 0.69 0.934126
Target:  5'- gGGCuCGGCGGCAUcggcggaGGcGGCGGUGguggCGGCg -3'
miRNA:   3'- -CUG-GCCGCUGUA-------CC-CUGCUAUa---GCUG- -5'
14215 3' -54.2 NC_003521.1 + 43838 0.69 0.93935
Target:  5'- cACUGGCGACAccugcaggUGGGgagACGAUAaaGACa -3'
miRNA:   3'- cUGGCCGCUGU--------ACCC---UGCUAUagCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.