Results 81 - 100 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14215 | 3' | -54.2 | NC_003521.1 | + | 103407 | 0.73 | 0.767525 |
Target: 5'- cGCUGGUGGCGUacaugaggucgGGGuuGAUGUCGACg -3' miRNA: 3'- cUGGCCGCUGUA-----------CCCugCUAUAGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 119782 | 0.75 | 0.650992 |
Target: 5'- gGACCGGCG-CAgcGGcGACGAgGUCGGCg -3' miRNA: 3'- -CUGGCCGCuGUa-CC-CUGCUaUAGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 1318 | 0.77 | 0.551553 |
Target: 5'- cGCCGGCGACGUGGcGCGGcugUAUCGGu -3' miRNA: 3'- cUGGCCGCUGUACCcUGCU---AUAGCUg -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 37666 | 0.78 | 0.503407 |
Target: 5'- uGCCGGCacgacgGGCAUGGGACGAUcgaucUCGGCu -3' miRNA: 3'- cUGGCCG------CUGUACCCUGCUAu----AGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 47484 | 0.8 | 0.421887 |
Target: 5'- cGAgCGGCGACAUGGGaACGAaggCGACc -3' miRNA: 3'- -CUgGCCGCUGUACCC-UGCUauaGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 186623 | 0.7 | 0.907505 |
Target: 5'- uACgCGGCGGCgGUGGuGGCGGcaaGUCGACg -3' miRNA: 3'- cUG-GCCGCUG-UACC-CUGCUa--UAGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 163229 | 0.7 | 0.913382 |
Target: 5'- -cCCGGUGACGUGGGuuCGGccaCGGCg -3' miRNA: 3'- cuGGCCGCUGUACCCu-GCUauaGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 204893 | 0.69 | 0.924454 |
Target: 5'- uGGCCGcGCGGC--GGGACGGUGgccgcCGAUg -3' miRNA: 3'- -CUGGC-CGCUGuaCCCUGCUAUa----GCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 125713 | 0.68 | 0.948146 |
Target: 5'- cGCCGGCGGuCAcgacgGGGGCGg---CGACg -3' miRNA: 3'- cUGGCCGCU-GUa----CCCUGCuauaGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 108275 | 0.68 | 0.948146 |
Target: 5'- aGAagaCGGCGGCAccgagggcggUGGuGGCGGUGaCGACg -3' miRNA: 3'- -CUg--GCCGCUGU----------ACC-CUGCUAUaGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 34080 | 0.68 | 0.948146 |
Target: 5'- -gUCGGCGGCAgucGGCGAUAUCGcGCg -3' miRNA: 3'- cuGGCCGCUGUaccCUGCUAUAGC-UG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 165153 | 0.68 | 0.948146 |
Target: 5'- uGCCGGCGugAUGGugguGAUGAUGguggGACu -3' miRNA: 3'- cUGGCCGCugUACC----CUGCUAUag--CUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 95806 | 0.69 | 0.94386 |
Target: 5'- cGACCaGCG-CGUcGG-CGAUGUCGGCg -3' miRNA: 3'- -CUGGcCGCuGUAcCCuGCUAUAGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 120968 | 0.69 | 0.94386 |
Target: 5'- gGACCGa-GGCccGGGugGAUAUcCGACg -3' miRNA: 3'- -CUGGCcgCUGuaCCCugCUAUA-GCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 38466 | 0.69 | 0.94386 |
Target: 5'- -gUCGGCGGcCGUGGGACG---UUGACc -3' miRNA: 3'- cuGGCCGCU-GUACCCUGCuauAGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 35804 | 0.69 | 0.94386 |
Target: 5'- cGACuaCGGCGGCGUGGG-CGAgaaccUGGCg -3' miRNA: 3'- -CUG--GCCGCUGUACCCuGCUaua--GCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 178797 | 0.69 | 0.93935 |
Target: 5'- gGACgGGCGagGCAUGcccggcGGGCGGgucgAUCGACg -3' miRNA: 3'- -CUGgCCGC--UGUAC------CCUGCUa---UAGCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 43838 | 0.69 | 0.93935 |
Target: 5'- cACUGGCGACAccugcaggUGGGgagACGAUAaaGACa -3' miRNA: 3'- cUGGCCGCUGU--------ACCC---UGCUAUagCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 186760 | 0.69 | 0.934126 |
Target: 5'- gGGCuCGGCGGCAUcggcggaGGcGGCGGUGguggCGGCg -3' miRNA: 3'- -CUG-GCCGCUGUA-------CC-CUGCUAUa---GCUG- -5' |
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14215 | 3' | -54.2 | NC_003521.1 | + | 63615 | 1.11 | 0.005817 |
Target: 5'- cGACCGGCGACAUGGGACGAUAUCGACg -3' miRNA: 3'- -CUGGCCGCUGUACCCUGCUAUAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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