miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 35804 0.69 0.94386
Target:  5'- cGACuaCGGCGGCGUGGG-CGAgaaccUGGCg -3'
miRNA:   3'- -CUG--GCCGCUGUACCCuGCUaua--GCUG- -5'
14215 3' -54.2 NC_003521.1 + 108032 0.66 0.985223
Target:  5'- cGGCgucaGGCGGCGgcGGGAUGAcg-CGACg -3'
miRNA:   3'- -CUGg---CCGCUGUa-CCCUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 178797 0.69 0.93935
Target:  5'- gGACgGGCGagGCAUGcccggcGGGCGGgucgAUCGACg -3'
miRNA:   3'- -CUGgCCGC--UGUAC------CCUGCUa---UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 120968 0.69 0.94386
Target:  5'- gGACCGa-GGCccGGGugGAUAUcCGACg -3'
miRNA:   3'- -CUGGCcgCUGuaCCCugCUAUA-GCUG- -5'
14215 3' -54.2 NC_003521.1 + 34080 0.68 0.948146
Target:  5'- -gUCGGCGGCAgucGGCGAUAUCGcGCg -3'
miRNA:   3'- cuGGCCGCUGUaccCUGCUAUAGC-UG- -5'
14215 3' -54.2 NC_003521.1 + 70366 0.68 0.956053
Target:  5'- -gUCGGCGACAugacUGGGGCGcgAgggGACa -3'
miRNA:   3'- cuGGCCGCUGU----ACCCUGCuaUag-CUG- -5'
14215 3' -54.2 NC_003521.1 + 135324 0.66 0.986844
Target:  5'- aGAgCGGU-ACAccacUGGGACGucGUCGACa -3'
miRNA:   3'- -CUgGCCGcUGU----ACCCUGCuaUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 38284 0.66 0.986844
Target:  5'- aGGCCGGCGcGCAgcaGGuGCGAgagcucGUCGGCc -3'
miRNA:   3'- -CUGGCCGC-UGUa--CCcUGCUa-----UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 76326 0.66 0.988325
Target:  5'- --gCGGCGACAgcugcggaGGcGACGGUGaCGGCu -3'
miRNA:   3'- cugGCCGCUGUa-------CC-CUGCUAUaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 48716 0.66 0.985223
Target:  5'- aGGCCGGgaGAgGUGGaGACGccggCGACg -3'
miRNA:   3'- -CUGGCCg-CUgUACC-CUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 148173 0.66 0.983454
Target:  5'- cGACCGGgGGgAUGGGACcc--UCGGu -3'
miRNA:   3'- -CUGGCCgCUgUACCCUGcuauAGCUg -5'
14215 3' -54.2 NC_003521.1 + 198457 0.67 0.977181
Target:  5'- uGGCCGuCGGCu---GGCGGUGUCGACa -3'
miRNA:   3'- -CUGGCcGCUGuaccCUGCUAUAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 36400 0.67 0.974236
Target:  5'- uGCUGGCGGCAgcgcGGGGCGuggauuucgcgGUCGGa -3'
miRNA:   3'- cUGGCCGCUGUa---CCCUGCua---------UAGCUg -5'
14215 3' -54.2 NC_003521.1 + 179055 0.68 0.956053
Target:  5'- aGCCGGCGGCGgucccGGuGACGGggaaCGGCu -3'
miRNA:   3'- cUGGCCGCUGUa----CC-CUGCUaua-GCUG- -5'
14215 3' -54.2 NC_003521.1 + 73201 0.66 0.988325
Target:  5'- aGACCcccGCGA-AUGGGACGA---CGACg -3'
miRNA:   3'- -CUGGc--CGCUgUACCCUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 218715 0.67 0.972125
Target:  5'- --aCGGCGGCGgcgGcGGGCGAgaagCGGCg -3'
miRNA:   3'- cugGCCGCUGUa--C-CCUGCUaua-GCUG- -5'
14215 3' -54.2 NC_003521.1 + 218091 0.67 0.977181
Target:  5'- --gCGGCGGCGccGGuGACGAUGagGGCg -3'
miRNA:   3'- cugGCCGCUGUa-CC-CUGCUAUagCUG- -5'
14215 3' -54.2 NC_003521.1 + 182181 0.66 0.97944
Target:  5'- cGGCCGGCG-CGUGGGGau---UCaGACa -3'
miRNA:   3'- -CUGGCCGCuGUACCCUgcuauAG-CUG- -5'
14215 3' -54.2 NC_003521.1 + 238693 0.69 0.94386
Target:  5'- -gUCGGCGGcCGUGGGACG---UUGACc -3'
miRNA:   3'- cuGGCCGCU-GUACCCUGCuauAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 16797 0.68 0.948146
Target:  5'- uGCCGGCGcccauUAUGGGGCGcagauccgagAUCGAUg -3'
miRNA:   3'- cUGGCCGCu----GUACCCUGCua--------UAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.