miRNA display CGI


Results 61 - 80 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 3' -54.2 NC_003521.1 + 196723 0.68 0.959681
Target:  5'- cACCGGCGGCGacggUGGuGGCGg---CGGCg -3'
miRNA:   3'- cUGGCCGCUGU----ACC-CUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 16797 0.68 0.948146
Target:  5'- uGCCGGCGcccauUAUGGGGCGcagauccgagAUCGAUg -3'
miRNA:   3'- cUGGCCGCu----GUACCCUGCua--------UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 238693 0.69 0.94386
Target:  5'- -gUCGGCGGcCGUGGGACG---UUGACc -3'
miRNA:   3'- cuGGCCGCU-GUACCCUGCuauAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 6979 0.69 0.94342
Target:  5'- aGACCGGCGACGacgauaaUGGaACGGUAgaaGAUc -3'
miRNA:   3'- -CUGGCCGCUGU-------ACCcUGCUAUag-CUG- -5'
14215 3' -54.2 NC_003521.1 + 209553 0.69 0.93935
Target:  5'- -cCCGGCGGgGUGGcGGCGAcggUGGCg -3'
miRNA:   3'- cuGGCCGCUgUACC-CUGCUauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 100226 0.72 0.82881
Target:  5'- aGGCCGGCGAgGUGgagcuGGGCGAggugccCGACg -3'
miRNA:   3'- -CUGGCCGCUgUAC-----CCUGCUaua---GCUG- -5'
14215 3' -54.2 NC_003521.1 + 117696 0.72 0.803418
Target:  5'- cACCGuagacGCGACAUGauGGACGAUgcgccGUCGACg -3'
miRNA:   3'- cUGGC-----CGCUGUAC--CCUGCUA-----UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 5646 0.67 0.969314
Target:  5'- gGACCcacauGGCGGCGgaGGGugGGggGUCGAg -3'
miRNA:   3'- -CUGG-----CCGCUGUa-CCCugCUa-UAGCUg -5'
14215 3' -54.2 NC_003521.1 + 106606 0.67 0.969314
Target:  5'- gGACC-GUGAgcauCGUGGGACGAUgccaaaggcgAUCGAUa -3'
miRNA:   3'- -CUGGcCGCU----GUACCCUGCUA----------UAGCUG- -5'
14215 3' -54.2 NC_003521.1 + 116460 0.67 0.969314
Target:  5'- cGACgCGGcCGugGUGGGACacGUggCGGCg -3'
miRNA:   3'- -CUG-GCC-GCugUACCCUGc-UAuaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 126393 0.66 0.988325
Target:  5'- cGGCCgucagGGCGAagcccGGGugGAUGUgGGCc -3'
miRNA:   3'- -CUGG-----CCGCUgua--CCCugCUAUAgCUG- -5'
14215 3' -54.2 NC_003521.1 + 213596 0.66 0.987453
Target:  5'- aGCCGGCGAUgaccaggcuguugGGGugGcgGUCGcCg -3'
miRNA:   3'- cUGGCCGCUGua-----------CCCugCuaUAGCuG- -5'
14215 3' -54.2 NC_003521.1 + 216294 0.66 0.986844
Target:  5'- gGAgCGGaCGACGUuggcgGGGGUGAUGUCGGg -3'
miRNA:   3'- -CUgGCC-GCUGUA-----CCCUGCUAUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 205220 0.66 0.986844
Target:  5'- gGGCCGGCaGGCGgaucagGGGACcc-AUCGAa -3'
miRNA:   3'- -CUGGCCG-CUGUa-----CCCUGcuaUAGCUg -5'
14215 3' -54.2 NC_003521.1 + 69782 0.66 0.986844
Target:  5'- --aCGGCGACGaGGGAgCGGccGUCGAg -3'
miRNA:   3'- cugGCCGCUGUaCCCU-GCUa-UAGCUg -5'
14215 3' -54.2 NC_003521.1 + 69116 0.66 0.985223
Target:  5'- cGCCGGCGACGU--GACGuuguuUGUCGuCa -3'
miRNA:   3'- cUGGCCGCUGUAccCUGCu----AUAGCuG- -5'
14215 3' -54.2 NC_003521.1 + 31703 0.66 0.978781
Target:  5'- gGGgCGGCGGCAgcaugugcgcgugcUGGGACGccg-CGGCc -3'
miRNA:   3'- -CUgGCCGCUGU--------------ACCCUGCuauaGCUG- -5'
14215 3' -54.2 NC_003521.1 + 218091 0.67 0.977181
Target:  5'- --gCGGCGGCGccGGuGACGAUGagGGCg -3'
miRNA:   3'- cugGCCGCUGUa-CC-CUGCUAUagCUG- -5'
14215 3' -54.2 NC_003521.1 + 218715 0.67 0.972125
Target:  5'- --aCGGCGGCGgcgGcGGGCGAgaagCGGCg -3'
miRNA:   3'- cugGCCGCUGUa--C-CCUGCUaua-GCUG- -5'
14215 3' -54.2 NC_003521.1 + 111385 0.67 0.972125
Target:  5'- --gCGGCGACGgagGGGACGcgcugcagCGGCu -3'
miRNA:   3'- cugGCCGCUGUa--CCCUGCuaua----GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.