miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14215 5' -51.2 NC_003521.1 + 125455 0.66 0.996868
Target:  5'- ---aCAUgccGGCCCUG-GCCAGCGAc- -3'
miRNA:   3'- uauaGUAa--CCGGGGUaCGGUUGCUau -5'
14215 5' -51.2 NC_003521.1 + 223658 0.66 0.994152
Target:  5'- -aAUUGUUcGGCCCCGUugGCCAGgGAg- -3'
miRNA:   3'- uaUAGUAA-CCGGGGUA--CGGUUgCUau -5'
14215 5' -51.2 NC_003521.1 + 239777 0.66 0.993237
Target:  5'- -gGUCggUGGCCCCGacGCCGGCc--- -3'
miRNA:   3'- uaUAGuaACCGGGGUa-CGGUUGcuau -5'
14215 5' -51.2 NC_003521.1 + 39550 0.66 0.993237
Target:  5'- -gGUCggUGGCCCCGacGCCGGCc--- -3'
miRNA:   3'- uaUAGuaACCGGGGUa-CGGUUGcuau -5'
14215 5' -51.2 NC_003521.1 + 238496 0.67 0.992212
Target:  5'- -gGUCAgcaGCCCCAggagGCCGGCGcgAg -3'
miRNA:   3'- uaUAGUaacCGGGGUa---CGGUUGCuaU- -5'
14215 5' -51.2 NC_003521.1 + 13585 0.67 0.992212
Target:  5'- -gGUCcgAUUGGCCCCccUGgCGACGAg- -3'
miRNA:   3'- uaUAG--UAACCGGGGu-ACgGUUGCUau -5'
14215 5' -51.2 NC_003521.1 + 126297 0.67 0.991067
Target:  5'- -aAUCGaUGGUgCCCGUGgCGGCGGUGg -3'
miRNA:   3'- uaUAGUaACCG-GGGUACgGUUGCUAU- -5'
14215 5' -51.2 NC_003521.1 + 146638 0.67 0.988383
Target:  5'- --uUCAagGGCCCCG-GCCAcgACGAc- -3'
miRNA:   3'- uauAGUaaCCGGGGUaCGGU--UGCUau -5'
14215 5' -51.2 NC_003521.1 + 222290 0.68 0.983232
Target:  5'- ---cCAga-GCCCCGUGCCAGCGu-- -3'
miRNA:   3'- uauaGUaacCGGGGUACGGUUGCuau -5'
14215 5' -51.2 NC_003521.1 + 53580 0.68 0.978944
Target:  5'- cGUGUCGccGGCaCCCAUGCUggUGGc- -3'
miRNA:   3'- -UAUAGUaaCCG-GGGUACGGuuGCUau -5'
14215 5' -51.2 NC_003521.1 + 31614 0.69 0.964749
Target:  5'- -gGUCAgcuggcagGGCCaCCGcgGCCGACGGUGg -3'
miRNA:   3'- uaUAGUaa------CCGG-GGUa-CGGUUGCUAU- -5'
14215 5' -51.2 NC_003521.1 + 237412 0.69 0.961255
Target:  5'- -gGUCugagUGGCCCCAuccccggaUGCCGGCGu-- -3'
miRNA:   3'- uaUAGua--ACCGGGGU--------ACGGUUGCuau -5'
14215 5' -51.2 NC_003521.1 + 115919 0.7 0.953565
Target:  5'- ---aCAcgGGCCCCGUGCUGugGGa- -3'
miRNA:   3'- uauaGUaaCCGGGGUACGGUugCUau -5'
14215 5' -51.2 NC_003521.1 + 111269 0.7 0.949359
Target:  5'- -cAUCGUcgGGCCcgCCGUGCCAGCGc-- -3'
miRNA:   3'- uaUAGUAa-CCGG--GGUACGGUUGCuau -5'
14215 5' -51.2 NC_003521.1 + 4632 0.7 0.949359
Target:  5'- -cAUCGacgUGGCuCCCAcGCCAGCGGa- -3'
miRNA:   3'- uaUAGUa--ACCG-GGGUaCGGUUGCUau -5'
14215 5' -51.2 NC_003521.1 + 126229 0.7 0.940206
Target:  5'- cGUGUagcccaGCCCCAUGUCAACGGUGu -3'
miRNA:   3'- -UAUAguaac-CGGGGUACGGUUGCUAU- -5'
14215 5' -51.2 NC_003521.1 + 177167 0.7 0.940206
Target:  5'- cAUAUCGUUGGCaugggGCCAAUGAUAu -3'
miRNA:   3'- -UAUAGUAACCGggguaCGGUUGCUAU- -5'
14215 5' -51.2 NC_003521.1 + 122635 0.71 0.930049
Target:  5'- --cUCGgcGGCCCCGacuuUGCCGGCGGg- -3'
miRNA:   3'- uauAGUaaCCGGGGU----ACGGUUGCUau -5'
14215 5' -51.2 NC_003521.1 + 139743 0.72 0.906697
Target:  5'- uAUAUUAgcaGGCCgCGUGCCGACGGc- -3'
miRNA:   3'- -UAUAGUaa-CCGGgGUACGGUUGCUau -5'
14215 5' -51.2 NC_003521.1 + 63653 1.05 0.017019
Target:  5'- gAUAUCAUUGGCCCCAUGCCAACGAUAu -3'
miRNA:   3'- -UAUAGUAACCGGGGUACGGUUGCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.