Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 14216 | 3' | -55.8 | NC_003521.1 | + | 66340 | 0.66 | 0.962264 |
|
Target: 5'- cGCCUGGcagcaacuggaucccGCUCGCGUGgc-CGGcGGCg- -3' miRNA: 3'- -UGGACC---------------CGAGUGCACaaaGCC-CUGau -5' |
|||||||
| 14216 | 3' | -55.8 | NC_003521.1 | + | 136089 | 0.66 | 0.960898 |
|
Target: 5'- cGCUggaGGGCUCG-GUGUgcgucaagaCGGGACUGg -3' miRNA: 3'- -UGGa--CCCGAGUgCACAaa-------GCCCUGAU- -5' |
|||||||
| 14216 | 3' | -55.8 | NC_003521.1 | + | 212693 | 0.67 | 0.936211 |
|
Target: 5'- cGCCaGGGCaaggCugGUGggUCGGGcCUc -3' miRNA: 3'- -UGGaCCCGa---GugCACaaAGCCCuGAu -5' |
|||||||
| 14216 | 3' | -55.8 | NC_003521.1 | + | 213372 | 0.67 | 0.92081 |
|
Target: 5'- aGCCUGGcGCUCACGgccgaaUUCGgccuGGGCUGc -3' miRNA: 3'- -UGGACC-CGAGUGCaca---AAGC----CCUGAU- -5' |
|||||||
| 14216 | 3' | -55.8 | NC_003521.1 | + | 37424 | 0.68 | 0.903348 |
|
Target: 5'- gGCCUGGGag-GCGUGgc-CGGGACc- -3' miRNA: 3'- -UGGACCCgagUGCACaaaGCCCUGau -5' |
|||||||
| 14216 | 3' | -55.8 | NC_003521.1 | + | 92539 | 0.69 | 0.83926 |
|
Target: 5'- gACCUGGGCUacccguGCGUGUacuaccacgUCGuGGACUu -3' miRNA: 3'- -UGGACCCGAg-----UGCACAa--------AGC-CCUGAu -5' |
|||||||
| 14216 | 3' | -55.8 | NC_003521.1 | + | 113225 | 0.7 | 0.822876 |
|
Target: 5'- cGCUcGGGcCUCACGUGcaucaCGGGGCUGc -3' miRNA: 3'- -UGGaCCC-GAGUGCACaaa--GCCCUGAU- -5' |
|||||||
| 14216 | 3' | -55.8 | NC_003521.1 | + | 111041 | 0.7 | 0.814431 |
|
Target: 5'- gGCCUcGGCgcgCACGUGcg-CGGGACa- -3' miRNA: 3'- -UGGAcCCGa--GUGCACaaaGCCCUGau -5' |
|||||||
| 14216 | 3' | -55.8 | NC_003521.1 | + | 19959 | 0.74 | 0.613186 |
|
Target: 5'- -aCUGuGGCUCAUGUuacugGUUUUGGGACUGu -3' miRNA: 3'- ugGAC-CCGAGUGCA-----CAAAGCCCUGAU- -5' |
|||||||
| 14216 | 3' | -55.8 | NC_003521.1 | + | 62333 | 1.06 | 0.006789 |
|
Target: 5'- gACCUGGGCUCACGUGUUUCGGGACUAc -3' miRNA: 3'- -UGGACCCGAGUGCACAAAGCCCUGAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home