miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14216 5' -53.7 NC_003521.1 + 34248 0.66 0.988979
Target:  5'- aUCuuGACGUGGUUGAagaaggucuugcccuCGggucccucgauUUCGCCCAGg -3'
miRNA:   3'- aAGu-CUGCGCCAACU---------------GC-----------AAGUGGGUC- -5'
14216 5' -53.7 NC_003521.1 + 196247 0.66 0.98842
Target:  5'- -cCuGGCGCGGUuucUGugGUUCcggguACCCGc -3'
miRNA:   3'- aaGuCUGCGCCA---ACugCAAG-----UGGGUc -5'
14216 5' -53.7 NC_003521.1 + 104095 0.66 0.98842
Target:  5'- --aGGACGCGGaaggcGGCGcgCugCCAGu -3'
miRNA:   3'- aagUCUGCGCCaa---CUGCaaGugGGUC- -5'
14216 5' -53.7 NC_003521.1 + 96573 0.66 0.98842
Target:  5'- -aCAGGCGUGGUagcUGAUcuGcgCGCCCAu -3'
miRNA:   3'- aaGUCUGCGCCA---ACUG--CaaGUGGGUc -5'
14216 5' -53.7 NC_003521.1 + 102964 0.66 0.986928
Target:  5'- cUCGGGCGuCGGggcucUGGCGgggCgGCCCAGc -3'
miRNA:   3'- aAGUCUGC-GCCa----ACUGCaa-G-UGGGUC- -5'
14216 5' -53.7 NC_003521.1 + 177392 0.66 0.983502
Target:  5'- aUCuuGCGCaGGUUGAgucCGUggugCGCCCAGu -3'
miRNA:   3'- aAGucUGCG-CCAACU---GCAa---GUGGGUC- -5'
14216 5' -53.7 NC_003521.1 + 128915 0.66 0.981554
Target:  5'- --uGGAUGCGGUUGAgGgccuggCGCgCCAGc -3'
miRNA:   3'- aagUCUGCGCCAACUgCaa----GUG-GGUC- -5'
14216 5' -53.7 NC_003521.1 + 110004 0.66 0.981554
Target:  5'- -cCAGcAgGCGGgaGAUGUgCACCCGGc -3'
miRNA:   3'- aaGUC-UgCGCCaaCUGCAaGUGGGUC- -5'
14216 5' -53.7 NC_003521.1 + 123572 0.66 0.981554
Target:  5'- -gCGGugGCGGgaUGGCGgcggCGCCgGGa -3'
miRNA:   3'- aaGUCugCGCCa-ACUGCaa--GUGGgUC- -5'
14216 5' -53.7 NC_003521.1 + 115818 0.66 0.981144
Target:  5'- cUCAGGCGCGGguggcucagcaGGCGcUgGCUCAGg -3'
miRNA:   3'- aAGUCUGCGCCaa---------CUGCaAgUGGGUC- -5'
14216 5' -53.7 NC_003521.1 + 32138 0.67 0.979438
Target:  5'- -gCGGGCGCGGUgcaccaagcGGCGgaaggCGCCCGc -3'
miRNA:   3'- aaGUCUGCGCCAa--------CUGCaa---GUGGGUc -5'
14216 5' -53.7 NC_003521.1 + 86407 0.67 0.979438
Target:  5'- gUC-GACGCGGggGACGcgCguGCCCGc -3'
miRNA:   3'- aAGuCUGCGCCaaCUGCaaG--UGGGUc -5'
14216 5' -53.7 NC_003521.1 + 30857 0.67 0.977146
Target:  5'- ---cGGCaGCGGUUGGCGUugUUGCUCAGu -3'
miRNA:   3'- aaguCUG-CGCCAACUGCA--AGUGGGUC- -5'
14216 5' -53.7 NC_003521.1 + 134437 0.67 0.973894
Target:  5'- --uGGAUGCGGUUGgugucggGCGUgugguagaagagCACCCGGa -3'
miRNA:   3'- aagUCUGCGCCAAC-------UGCAa-----------GUGGGUC- -5'
14216 5' -53.7 NC_003521.1 + 127155 0.67 0.972009
Target:  5'- -gCAGGCGCGGUUGuuGgUCAUggCCGGc -3'
miRNA:   3'- aaGUCUGCGCCAACugCaAGUG--GGUC- -5'
14216 5' -53.7 NC_003521.1 + 172385 0.67 0.96915
Target:  5'- -cCGGcACGCGGUUGAgGggCGCCggCGGa -3'
miRNA:   3'- aaGUC-UGCGCCAACUgCaaGUGG--GUC- -5'
14216 5' -53.7 NC_003521.1 + 124278 0.67 0.96915
Target:  5'- --gAGGCGCGGcUGACGaUC-UCCAGa -3'
miRNA:   3'- aagUCUGCGCCaACUGCaAGuGGGUC- -5'
14216 5' -53.7 NC_003521.1 + 68234 0.67 0.96915
Target:  5'- -gCAGGaGCGGU--ACGUUCACCUGGc -3'
miRNA:   3'- aaGUCUgCGCCAacUGCAAGUGGGUC- -5'
14216 5' -53.7 NC_003521.1 + 124443 0.68 0.961798
Target:  5'- --gAGACGUGGUUGggccgcggcggcacGCGUUCGCCg-- -3'
miRNA:   3'- aagUCUGCGCCAAC--------------UGCAAGUGGguc -5'
14216 5' -53.7 NC_003521.1 + 182372 0.68 0.959337
Target:  5'- gUC-GACGUGGUgcgcGGaaaGUUCGCCCGGc -3'
miRNA:   3'- aAGuCUGCGCCAa---CUg--CAAGUGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.