miRNA display CGI


Results 1 - 20 of 574 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14220 3' -60 NC_003521.1 + 223401 0.66 0.845097
Target:  5'- cGCgGGCCGUgUGGCGCC-CCGGCGcgGCg -3'
miRNA:   3'- -CG-CCGGCG-GUCGUGGuGGUCGUcaUG- -5'
14220 3' -60 NC_003521.1 + 152733 0.66 0.845097
Target:  5'- uUGGCCaccaGCCGGUuguccuCCACgGGCAGcGCg -3'
miRNA:   3'- cGCCGG----CGGUCGu-----GGUGgUCGUCaUG- -5'
14220 3' -60 NC_003521.1 + 81981 0.66 0.845097
Target:  5'- cGCGGUagaGCCAGgugcuGCCGCgGGUguGGUACu -3'
miRNA:   3'- -CGCCGg--CGGUCg----UGGUGgUCG--UCAUG- -5'
14220 3' -60 NC_003521.1 + 92011 0.66 0.845097
Target:  5'- aGCGGCgagGCgCGGCGgCGgCGGCGGUGg -3'
miRNA:   3'- -CGCCGg--CG-GUCGUgGUgGUCGUCAUg -5'
14220 3' -60 NC_003521.1 + 58709 0.66 0.845097
Target:  5'- aCGGCCuugaCgCAGC-CCACCgucuccaggcGGCGGUGCa -3'
miRNA:   3'- cGCCGGc---G-GUCGuGGUGG----------UCGUCAUG- -5'
14220 3' -60 NC_003521.1 + 149404 0.66 0.845097
Target:  5'- cGUGGCCgugGCCGuCACgGaCgAGCAGUGCu -3'
miRNA:   3'- -CGCCGG---CGGUcGUGgU-GgUCGUCAUG- -5'
14220 3' -60 NC_003521.1 + 82847 0.66 0.845097
Target:  5'- cGCGGgCGgCGGCgucGCUACCAGCGc--- -3'
miRNA:   3'- -CGCCgGCgGUCG---UGGUGGUCGUcaug -5'
14220 3' -60 NC_003521.1 + 208861 0.66 0.845097
Target:  5'- uGCGGCUGgaCGGCACCAUguGCc---- -3'
miRNA:   3'- -CGCCGGCg-GUCGUGGUGguCGucaug -5'
14220 3' -60 NC_003521.1 + 64906 0.66 0.845097
Target:  5'- cCGGCUccucggGCCAGguCC-CCAGCAGc-- -3'
miRNA:   3'- cGCCGG------CGGUCguGGuGGUCGUCaug -5'
14220 3' -60 NC_003521.1 + 28311 0.66 0.845097
Target:  5'- aGCGGCagcgaccCCGGCGCgGCCuGCGG-ACc -3'
miRNA:   3'- -CGCCGgc-----GGUCGUGgUGGuCGUCaUG- -5'
14220 3' -60 NC_003521.1 + 237168 0.66 0.845097
Target:  5'- cCGGCCGCCgaGGCAgaCGgCGGCGGccgugGCa -3'
miRNA:   3'- cGCCGGCGG--UCGUg-GUgGUCGUCa----UG- -5'
14220 3' -60 NC_003521.1 + 109507 0.66 0.845097
Target:  5'- aGUGGUcgCGCCGGcCGCUGCUcgAGCAGgGCg -3'
miRNA:   3'- -CGCCG--GCGGUC-GUGGUGG--UCGUCaUG- -5'
14220 3' -60 NC_003521.1 + 99708 0.66 0.845097
Target:  5'- cGCGGgCGCagaAGCugCGCgGgccGCAGUAg -3'
miRNA:   3'- -CGCCgGCGg--UCGugGUGgU---CGUCAUg -5'
14220 3' -60 NC_003521.1 + 38712 0.66 0.845097
Target:  5'- cGCGGgCGUCcugguGGCGCUACUuaAGCGcGUGCu -3'
miRNA:   3'- -CGCCgGCGG-----UCGUGGUGG--UCGU-CAUG- -5'
14220 3' -60 NC_003521.1 + 117634 0.66 0.844329
Target:  5'- cCGGugucguuCCGCCugcgacuGCGCCGCgAGaCGGUGCg -3'
miRNA:   3'- cGCC-------GGCGGu------CGUGGUGgUC-GUCAUG- -5'
14220 3' -60 NC_003521.1 + 17458 0.66 0.840463
Target:  5'- cGCGGCagCGCUcggaggagagacgacGGCACCGgUAGCGGcGCc -3'
miRNA:   3'- -CGCCG--GCGG---------------UCGUGGUgGUCGUCaUG- -5'
14220 3' -60 NC_003521.1 + 165840 0.66 0.837339
Target:  5'- cGCGcacCCGCUcgggcgAGCACaggaagcuCCAGCGGUGCa -3'
miRNA:   3'- -CGCc--GGCGG------UCGUGgu------GGUCGUCAUG- -5'
14220 3' -60 NC_003521.1 + 192760 0.66 0.837339
Target:  5'- cGCgGGCCGUccauCAGCucgaucuCCACCGGCAcggGCu -3'
miRNA:   3'- -CG-CCGGCG----GUCGu------GGUGGUCGUca-UG- -5'
14220 3' -60 NC_003521.1 + 32725 0.66 0.837339
Target:  5'- gGgGGuuGgCGaCGCCACCAGCGG-GCg -3'
miRNA:   3'- -CgCCggCgGUcGUGGUGGUCGUCaUG- -5'
14220 3' -60 NC_003521.1 + 19111 0.66 0.837339
Target:  5'- aCGGCCGgCAcGUACCACU-GC-GUGCu -3'
miRNA:   3'- cGCCGGCgGU-CGUGGUGGuCGuCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.