miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14220 5' -54.3 NC_003521.1 + 123292 0.66 0.984247
Target:  5'- -cGUGCCGCCAGguCGucGUAGC-CCa -3'
miRNA:   3'- guCAUGGUGGUUguGCu-CGUCGuGGc -5'
14220 5' -54.3 NC_003521.1 + 53341 0.66 0.984247
Target:  5'- -cGUgACCACCAcgccgGCGCG-GCGGCggagggGCCGa -3'
miRNA:   3'- guCA-UGGUGGU-----UGUGCuCGUCG------UGGC- -5'
14220 5' -54.3 NC_003521.1 + 197347 0.66 0.984247
Target:  5'- ---cGCgGCCAGCACGGccGCcGCGCUGg -3'
miRNA:   3'- gucaUGgUGGUUGUGCU--CGuCGUGGC- -5'
14220 5' -54.3 NC_003521.1 + 196836 0.66 0.984247
Target:  5'- gCAGgcCCACgAACccCGAGCAGCuCUGc -3'
miRNA:   3'- -GUCauGGUGgUUGu-GCUCGUCGuGGC- -5'
14220 5' -54.3 NC_003521.1 + 77007 0.66 0.984247
Target:  5'- ---cGCCGCCGucCAgGGGCAGCAUgCGg -3'
miRNA:   3'- gucaUGGUGGUu-GUgCUCGUCGUG-GC- -5'
14220 5' -54.3 NC_003521.1 + 193787 0.66 0.984247
Target:  5'- uCAGUACCAggGACAcaaugcCGGGCguGGUACCGu -3'
miRNA:   3'- -GUCAUGGUggUUGU------GCUCG--UCGUGGC- -5'
14220 5' -54.3 NC_003521.1 + 18752 0.66 0.984247
Target:  5'- gCGGUGgCGCCGACGgGucGCuGCugCGa -3'
miRNA:   3'- -GUCAUgGUGGUUGUgCu-CGuCGugGC- -5'
14220 5' -54.3 NC_003521.1 + 210109 0.66 0.984247
Target:  5'- aGGU--CACgCGACAUGAGCccgcGGCGCCGc -3'
miRNA:   3'- gUCAugGUG-GUUGUGCUCG----UCGUGGC- -5'
14220 5' -54.3 NC_003521.1 + 14793 0.66 0.984247
Target:  5'- uGGUGCUGCUgGACugGuuCGGCGCCGu -3'
miRNA:   3'- gUCAUGGUGG-UUGugCucGUCGUGGC- -5'
14220 5' -54.3 NC_003521.1 + 140073 0.66 0.984247
Target:  5'- gAGUgcGCCAggcCCAGCuCGGGguGCAUCa -3'
miRNA:   3'- gUCA--UGGU---GGUUGuGCUCguCGUGGc -5'
14220 5' -54.3 NC_003521.1 + 27837 0.66 0.984247
Target:  5'- cCAGUuUCACCAGgGCGAGC--CGCUGg -3'
miRNA:   3'- -GUCAuGGUGGUUgUGCUCGucGUGGC- -5'
14220 5' -54.3 NC_003521.1 + 154398 0.66 0.984247
Target:  5'- --cUGCCGCCAAUcaggagGCGGGCAcGCGCg- -3'
miRNA:   3'- gucAUGGUGGUUG------UGCUCGU-CGUGgc -5'
14220 5' -54.3 NC_003521.1 + 171311 0.66 0.984247
Target:  5'- gCGGUGCUggGCCucAACGCG-GCcuGCGCCGu -3'
miRNA:   3'- -GUCAUGG--UGG--UUGUGCuCGu-CGUGGC- -5'
14220 5' -54.3 NC_003521.1 + 64891 0.66 0.984247
Target:  5'- -uGUACgagcgcuacaaaCGCgAGCugGAGCAGCugCa -3'
miRNA:   3'- guCAUG------------GUGgUUGugCUCGUCGugGc -5'
14220 5' -54.3 NC_003521.1 + 64323 0.66 0.984247
Target:  5'- ---gGCCAUgGuACACGAGCAGaugaGCCa -3'
miRNA:   3'- gucaUGGUGgU-UGUGCUCGUCg---UGGc -5'
14220 5' -54.3 NC_003521.1 + 155335 0.66 0.984247
Target:  5'- gGGUcCCGgCGgggGCGCGGGCAccgGCACCa -3'
miRNA:   3'- gUCAuGGUgGU---UGUGCUCGU---CGUGGc -5'
14220 5' -54.3 NC_003521.1 + 142904 0.66 0.982377
Target:  5'- gCGGcGCCAUCAGCcgGCGAcgucggcguuGCAGCAgCGg -3'
miRNA:   3'- -GUCaUGGUGGUUG--UGCU----------CGUCGUgGC- -5'
14220 5' -54.3 NC_003521.1 + 16500 0.66 0.982377
Target:  5'- ---cGCUACgAGCACGGGCugcGGCGCuCGg -3'
miRNA:   3'- gucaUGGUGgUUGUGCUCG---UCGUG-GC- -5'
14220 5' -54.3 NC_003521.1 + 101216 0.66 0.982377
Target:  5'- gCAGaagGCCACCGuguucCugGugccGCGGCGCCa -3'
miRNA:   3'- -GUCa--UGGUGGUu----GugCu---CGUCGUGGc -5'
14220 5' -54.3 NC_003521.1 + 118200 0.66 0.982377
Target:  5'- uCGGgGCCGCCGA-GCGcGCGGcCGCCGc -3'
miRNA:   3'- -GUCaUGGUGGUUgUGCuCGUC-GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.