miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14221 3' -55.6 NC_003521.1 + 232820 0.66 0.966403
Target:  5'- gGAGcUACG----GCGCUGCCCCGGUa -3'
miRNA:   3'- aUUCuAUGUagagCGCGGUGGGGCCA- -5'
14221 3' -55.6 NC_003521.1 + 228119 0.66 0.963186
Target:  5'- -----gGCAacgCUCGCGUUACCCgCGGUc -3'
miRNA:   3'- auucuaUGUa--GAGCGCGGUGGG-GCCA- -5'
14221 3' -55.6 NC_003521.1 + 206614 0.66 0.963186
Target:  5'- cGGGcgcCGUCUa-CGCCGCCCUGGUg -3'
miRNA:   3'- aUUCuauGUAGAgcGCGGUGGGGCCA- -5'
14221 3' -55.6 NC_003521.1 + 195072 0.66 0.963186
Target:  5'- --uGAcGCgGUCUCGCGCUACaaaaCCCGGc -3'
miRNA:   3'- auuCUaUG-UAGAGCGCGGUG----GGGCCa -5'
14221 3' -55.6 NC_003521.1 + 226330 0.66 0.95976
Target:  5'- cAAGAUguGCAUggUGCGCgCGCCCCGcGg -3'
miRNA:   3'- aUUCUA--UGUAgaGCGCG-GUGGGGC-Ca -5'
14221 3' -55.6 NC_003521.1 + 190472 0.66 0.95976
Target:  5'- ---cGUAgAUCUCGuCGUuuCGCCCCGGg -3'
miRNA:   3'- auucUAUgUAGAGC-GCG--GUGGGGCCa -5'
14221 3' -55.6 NC_003521.1 + 10396 0.66 0.95976
Target:  5'- aAGGAUGgAUaC-CGCGUCGCCCCGc- -3'
miRNA:   3'- aUUCUAUgUA-GaGCGCGGUGGGGCca -5'
14221 3' -55.6 NC_003521.1 + 124401 0.66 0.95976
Target:  5'- uUGAGAgGCAUCggCGUGCCAUCgCCGc- -3'
miRNA:   3'- -AUUCUaUGUAGa-GCGCGGUGG-GGCca -5'
14221 3' -55.6 NC_003521.1 + 113526 0.66 0.956121
Target:  5'- -----aACAUCgaggCGCGCCACCaCGGc -3'
miRNA:   3'- auucuaUGUAGa---GCGCGGUGGgGCCa -5'
14221 3' -55.6 NC_003521.1 + 30057 0.66 0.956121
Target:  5'- --uGGUACGUCUCagucuGUGCCGuCCCCGc- -3'
miRNA:   3'- auuCUAUGUAGAG-----CGCGGU-GGGGCca -5'
14221 3' -55.6 NC_003521.1 + 111161 0.66 0.956121
Target:  5'- --cGGUccGCAUagCGCgGCCGCCCCGGc -3'
miRNA:   3'- auuCUA--UGUAgaGCG-CGGUGGGGCCa -5'
14221 3' -55.6 NC_003521.1 + 155200 0.66 0.956121
Target:  5'- gGAGGUGCAcgaccUCUCG-GCCcucuucgcGCCCuCGGUg -3'
miRNA:   3'- aUUCUAUGU-----AGAGCgCGG--------UGGG-GCCA- -5'
14221 3' -55.6 NC_003521.1 + 110819 0.66 0.952264
Target:  5'- -cAGcgGCcgUUgCGCGCCGCCgCCGGc -3'
miRNA:   3'- auUCuaUGuaGA-GCGCGGUGG-GGCCa -5'
14221 3' -55.6 NC_003521.1 + 120071 0.66 0.952264
Target:  5'- cAGGccgGCAUCcaggCGCGCCAccuggugcCCCUGGUg -3'
miRNA:   3'- aUUCua-UGUAGa---GCGCGGU--------GGGGCCA- -5'
14221 3' -55.6 NC_003521.1 + 180077 0.67 0.939354
Target:  5'- --cGAUGuCGUUgCGCGUCACCCCGu- -3'
miRNA:   3'- auuCUAU-GUAGaGCGCGGUGGGGCca -5'
14221 3' -55.6 NC_003521.1 + 239504 0.67 0.939354
Target:  5'- --cGAUACAgC-CGCGCCACUcgCCGGc -3'
miRNA:   3'- auuCUAUGUaGaGCGCGGUGG--GGCCa -5'
14221 3' -55.6 NC_003521.1 + 233095 0.67 0.939354
Target:  5'- -----cGCcgCUCGCGCCGCCCUc-- -3'
miRNA:   3'- auucuaUGuaGAGCGCGGUGGGGcca -5'
14221 3' -55.6 NC_003521.1 + 182029 0.67 0.938888
Target:  5'- cGAGAccgucuaUGCGUCgucgccggcgCGCGCCGCCCUGc- -3'
miRNA:   3'- aUUCU-------AUGUAGa---------GCGCGGUGGGGCca -5'
14221 3' -55.6 NC_003521.1 + 89299 0.67 0.934596
Target:  5'- -----cGCGUC-CGCGCCGCCuCUGGc -3'
miRNA:   3'- auucuaUGUAGaGCGCGGUGG-GGCCa -5'
14221 3' -55.6 NC_003521.1 + 75981 0.67 0.934596
Target:  5'- gAAGAa--GUCUgGCGCCGgCCgCCGGUu -3'
miRNA:   3'- aUUCUaugUAGAgCGCGGU-GG-GGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.