miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14221 5' -53.4 NC_003521.1 + 169201 0.66 0.993086
Target:  5'- uGGACGGgcgGG-GACGGagGAGACaACAa -3'
miRNA:   3'- -UCUGCCa--CCaCUGCUa-CUCUGcUGUg -5'
14221 5' -53.4 NC_003521.1 + 49071 0.66 0.992094
Target:  5'- aGGAccCGGUGGaccgucgGACGG-GGGGCGAUAUc -3'
miRNA:   3'- -UCU--GCCACCa------CUGCUaCUCUGCUGUG- -5'
14221 5' -53.4 NC_003521.1 + 87372 0.66 0.992094
Target:  5'- gAGGCcgaGGUGGagGACGAggcggcgGAGGUGACGCc -3'
miRNA:   3'- -UCUG---CCACCa-CUGCUa------CUCUGCUGUG- -5'
14221 5' -53.4 NC_003521.1 + 199479 0.66 0.992094
Target:  5'- cGACGGUGGaUGACGcgauagcGAucGGCGGCGa -3'
miRNA:   3'- uCUGCCACC-ACUGCua-----CU--CUGCUGUg -5'
14221 5' -53.4 NC_003521.1 + 16900 0.66 0.992094
Target:  5'- aGGA-GGUGGagGACGAgGAGGCgGACGa -3'
miRNA:   3'- -UCUgCCACCa-CUGCUaCUCUG-CUGUg -5'
14221 5' -53.4 NC_003521.1 + 26032 0.66 0.992094
Target:  5'- cGACGGcGGUGAaGA--GGACGGCGg -3'
miRNA:   3'- uCUGCCaCCACUgCUacUCUGCUGUg -5'
14221 5' -53.4 NC_003521.1 + 155250 0.66 0.992094
Target:  5'- uGGUGGUGGggGGCGgcGGcGGCGGCGCc -3'
miRNA:   3'- uCUGCCACCa-CUGCuaCU-CUGCUGUG- -5'
14221 5' -53.4 NC_003521.1 + 239263 0.66 0.990993
Target:  5'- cGACGGcgGGUGugGcgccGAGGCGAacgGCu -3'
miRNA:   3'- uCUGCCa-CCACugCua--CUCUGCUg--UG- -5'
14221 5' -53.4 NC_003521.1 + 39035 0.66 0.990993
Target:  5'- cGACGGcgGGUGugGcgccGAGGCGAacgGCu -3'
miRNA:   3'- uCUGCCa-CCACugCua--CUCUGCUg--UG- -5'
14221 5' -53.4 NC_003521.1 + 160474 0.66 0.989774
Target:  5'- uGugGGaGGagaGGCGAgGAGACgGACACa -3'
miRNA:   3'- uCugCCaCCa--CUGCUaCUCUG-CUGUG- -5'
14221 5' -53.4 NC_003521.1 + 74235 0.66 0.989774
Target:  5'- cGGCGcc-GUGACGGUG-GACGACGg -3'
miRNA:   3'- uCUGCcacCACUGCUACuCUGCUGUg -5'
14221 5' -53.4 NC_003521.1 + 123696 0.66 0.989774
Target:  5'- uGGCGGUGGaa--GAgGAGGCGGCGg -3'
miRNA:   3'- uCUGCCACCacugCUaCUCUGCUGUg -5'
14221 5' -53.4 NC_003521.1 + 164217 0.66 0.988429
Target:  5'- cGGCGGUGGUagcGGCGGcUGgacGGugGAgGCu -3'
miRNA:   3'- uCUGCCACCA---CUGCU-AC---UCugCUgUG- -5'
14221 5' -53.4 NC_003521.1 + 36759 0.66 0.988429
Target:  5'- cGACGuGUGGUG-CGAcUGcGGCGACugGCa -3'
miRNA:   3'- uCUGC-CACCACuGCU-ACuCUGCUG--UG- -5'
14221 5' -53.4 NC_003521.1 + 54947 0.66 0.988429
Target:  5'- uGACGGUGGUGuucuccuugaGCGcacGGAUGACAg -3'
miRNA:   3'- uCUGCCACCAC----------UGCuacUCUGCUGUg -5'
14221 5' -53.4 NC_003521.1 + 90944 0.67 0.987559
Target:  5'- cGGGCGauggaagaggaagaaGUGGUGugGGcgggagGAGGCGGCGa -3'
miRNA:   3'- -UCUGC---------------CACCACugCUa-----CUCUGCUGUg -5'
14221 5' -53.4 NC_003521.1 + 123344 0.67 0.986952
Target:  5'- cGGACaGGcccgucgccgGGUGugGAgGAGGCGGCGg -3'
miRNA:   3'- -UCUG-CCa---------CCACugCUaCUCUGCUGUg -5'
14221 5' -53.4 NC_003521.1 + 129204 0.67 0.986952
Target:  5'- uGAUGGUGGUcuGGCGcGUG-GugGGCAg -3'
miRNA:   3'- uCUGCCACCA--CUGC-UACuCugCUGUg -5'
14221 5' -53.4 NC_003521.1 + 125320 0.67 0.986952
Target:  5'- cGGCGGUGGguccGGCcacaGAG-CGACACg -3'
miRNA:   3'- uCUGCCACCa---CUGcua-CUCuGCUGUG- -5'
14221 5' -53.4 NC_003521.1 + 187492 0.67 0.986952
Target:  5'- cGGCguGGUGGUcacGACGAUccgacGAGACGGCu- -3'
miRNA:   3'- uCUG--CCACCA---CUGCUA-----CUCUGCUGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.