miRNA display CGI


Results 21 - 40 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14228 3' -68.6 NC_003521.1 + 44096 0.66 0.496493
Target:  5'- -cGCCgCCGCCaccaCCGUcGCCGCCgGu -3'
miRNA:   3'- gaCGGgGGCGGcg--GGCA-CGGCGGgCu -5'
14228 3' -68.6 NC_003521.1 + 188533 0.66 0.491359
Target:  5'- -gGCCCCaCGUCGCCaucaccaugaacGCCGCuCCGGa -3'
miRNA:   3'- gaCGGGG-GCGGCGGgca---------CGGCG-GGCU- -5'
14228 3' -68.6 NC_003521.1 + 31746 0.66 0.491359
Target:  5'- -cGCCUCCGCCGCCuCGaccggcacaucgggGUCGCgCCa- -3'
miRNA:   3'- gaCGGGGGCGGCGG-GCa-------------CGGCG-GGcu -5'
14228 3' -68.6 NC_003521.1 + 125880 0.66 0.488802
Target:  5'- -aGCCgCCGCUGCgCGagcagcucuccagcaGCCGCUCGAg -3'
miRNA:   3'- gaCGGgGGCGGCGgGCa--------------CGGCGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 40485 0.66 0.48795
Target:  5'- -aGUCCCCGCgaCGaCCC--GCCGgCCCGAa -3'
miRNA:   3'- gaCGGGGGCG--GC-GGGcaCGGC-GGGCU- -5'
14228 3' -68.6 NC_003521.1 + 240712 0.66 0.48795
Target:  5'- -aGUCCCCGCgaCGaCCC--GCCGgCCCGAa -3'
miRNA:   3'- gaCGGGGGCG--GC-GGGcaCGGC-GGGCU- -5'
14228 3' -68.6 NC_003521.1 + 132542 0.66 0.48795
Target:  5'- -cGCCaCCaCCGCCCucgGUGCCGCCg-- -3'
miRNA:   3'- gaCGGgGGcGGCGGG---CACGGCGGgcu -5'
14228 3' -68.6 NC_003521.1 + 204236 0.66 0.48795
Target:  5'- -gGCCaCCCGCCGCCag-GCCaGUUCGc -3'
miRNA:   3'- gaCGG-GGGCGGCGGgcaCGG-CGGGCu -5'
14228 3' -68.6 NC_003521.1 + 163 0.66 0.48795
Target:  5'- -aGUCCCCGCgaCGaCCC--GCCGgCCCGAa -3'
miRNA:   3'- gaCGGGGGCG--GC-GGGcaCGGC-GGGCU- -5'
14228 3' -68.6 NC_003521.1 + 26262 0.66 0.48795
Target:  5'- -cGCCCCUGCUGCUCa-GCUGCaccCCGGu -3'
miRNA:   3'- gaCGGGGGCGGCGGGcaCGGCG---GGCU- -5'
14228 3' -68.6 NC_003521.1 + 152309 0.66 0.4871
Target:  5'- -cGCCUgcacggcugcgagUCGCUGCgCGUGCCGCUCu- -3'
miRNA:   3'- gaCGGG-------------GGCGGCGgGCACGGCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 104881 0.66 0.482858
Target:  5'- -cGCCCUCGgugauacgguucgauCCcaGCCUGcUGCCGUCCGAc -3'
miRNA:   3'- gaCGGGGGC---------------GG--CGGGC-ACGGCGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 989 0.66 0.479477
Target:  5'- uCUGCUCCCGUgGgCCG-GCCGUaCGGc -3'
miRNA:   3'- -GACGGGGGCGgCgGGCaCGGCGgGCU- -5'
14228 3' -68.6 NC_003521.1 + 40525 0.66 0.479477
Target:  5'- -gGCCggCCCGCCGCac--GCCGCCgCGGa -3'
miRNA:   3'- gaCGG--GGGCGGCGggcaCGGCGG-GCU- -5'
14228 3' -68.6 NC_003521.1 + 97695 0.66 0.479477
Target:  5'- aCU-CCCUCGCCGUCgGUGgUGgCCGAc -3'
miRNA:   3'- -GAcGGGGGCGGCGGgCACgGCgGGCU- -5'
14228 3' -68.6 NC_003521.1 + 234946 0.66 0.479477
Target:  5'- --cUCCCCGCUGacucaucguuuCCUGUGCCcgcGCCCGGa -3'
miRNA:   3'- gacGGGGGCGGC-----------GGGCACGG---CGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 240752 0.66 0.479477
Target:  5'- -gGCCggCCCGCCGCac--GCCGCCgCGGa -3'
miRNA:   3'- gaCGG--GGGCGGCGggcaCGGCGG-GCU- -5'
14228 3' -68.6 NC_003521.1 + 153059 0.66 0.479477
Target:  5'- -gGCCCCCagGCCuCCUccGCCGCCgGGg -3'
miRNA:   3'- gaCGGGGG--CGGcGGGcaCGGCGGgCU- -5'
14228 3' -68.6 NC_003521.1 + 203 0.66 0.479477
Target:  5'- -gGCCggCCCGCCGCac--GCCGCCgCGGa -3'
miRNA:   3'- gaCGG--GGGCGGCGggcaCGGCGG-GCU- -5'
14228 3' -68.6 NC_003521.1 + 54436 0.66 0.479477
Target:  5'- gCUGCCgCCGCUGCuuGgGCCGa-CGGg -3'
miRNA:   3'- -GACGGgGGCGGCGggCaCGGCggGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.