miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14228 5' -55.3 NC_003521.1 + 83299 0.66 0.969212
Target:  5'- gGCCAuguccacauugUGCGACAGGgGGUaGcGGucGGu -3'
miRNA:   3'- gCGGU-----------ACGUUGUCCgCCA-CuCCuuCC- -5'
14228 5' -55.3 NC_003521.1 + 148519 0.66 0.969212
Target:  5'- -----cGgGACGGG-GGUGGGGGAGGg -3'
miRNA:   3'- gcgguaCgUUGUCCgCCACUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 44511 0.66 0.969212
Target:  5'- cCGCCGU-CGuCAGGCGGcgcaGGGGAAucGGa -3'
miRNA:   3'- -GCGGUAcGUuGUCCGCCa---CUCCUU--CC- -5'
14228 5' -55.3 NC_003521.1 + 98601 0.66 0.966212
Target:  5'- aGCgCA-GCGACgAGGCcauGGcGAGGAGGGc -3'
miRNA:   3'- gCG-GUaCGUUG-UCCG---CCaCUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 172326 0.66 0.966212
Target:  5'- gGCCGgucGCGGCGGaCgGGUGAGGGGcGGc -3'
miRNA:   3'- gCGGUa--CGUUGUCcG-CCACUCCUU-CC- -5'
14228 5' -55.3 NC_003521.1 + 99032 0.66 0.966211
Target:  5'- gCGCCG-GCucCGGGcCGGUccGAGGuAGGGa -3'
miRNA:   3'- -GCGGUaCGuuGUCC-GCCA--CUCC-UUCC- -5'
14228 5' -55.3 NC_003521.1 + 134489 0.66 0.966211
Target:  5'- uGCUcUGCAcGCucuGGCGGaUGAGGcAGGc -3'
miRNA:   3'- gCGGuACGU-UGu--CCGCC-ACUCCuUCC- -5'
14228 5' -55.3 NC_003521.1 + 115739 0.66 0.966211
Target:  5'- uGCCGUu--GCGGGCcaGGUccucGGGGAAGGg -3'
miRNA:   3'- gCGGUAcguUGUCCG--CCA----CUCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 154065 0.66 0.964315
Target:  5'- aGCCGUGCAGCAGccgcagaaaGCucaucgucuggcccGUGGGGAAGa -3'
miRNA:   3'- gCGGUACGUUGUC---------CGc-------------CACUCCUUCc -5'
14228 5' -55.3 NC_003521.1 + 138704 0.66 0.96301
Target:  5'- aGCCuggGCGGCAcgggcgcuggcuGGUGGUGcguccGGAGGGu -3'
miRNA:   3'- gCGGua-CGUUGU------------CCGCCACu----CCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 175400 0.66 0.96301
Target:  5'- uGaCCcgGC-GCAGGUGGgucAGGGAGGc -3'
miRNA:   3'- gC-GGuaCGuUGUCCGCCac-UCCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 155437 0.67 0.959603
Target:  5'- gGCCAagcGCAGCcgcuugugAGGCGGagGAgaaGGAGGGg -3'
miRNA:   3'- gCGGUa--CGUUG--------UCCGCCa-CU---CCUUCC- -5'
14228 5' -55.3 NC_003521.1 + 31424 0.67 0.959603
Target:  5'- uGgCGUGCAGCAGGCGGaUGAu----- -3'
miRNA:   3'- gCgGUACGUUGUCCGCC-ACUccuucc -5'
14228 5' -55.3 NC_003521.1 + 43553 0.67 0.959603
Target:  5'- aCGCC--GCGACagAGGCGGccgcUGAcuGGggGGa -3'
miRNA:   3'- -GCGGuaCGUUG--UCCGCC----ACU--CCuuCC- -5'
14228 5' -55.3 NC_003521.1 + 165750 0.67 0.959603
Target:  5'- gGCCAccaugGCGucGgAGGCGGUG-GGcAGGa -3'
miRNA:   3'- gCGGUa----CGU--UgUCCGCCACuCCuUCC- -5'
14228 5' -55.3 NC_003521.1 + 205241 0.67 0.955986
Target:  5'- uCGCUGUGCca-GGGCGGUuAGGAGa- -3'
miRNA:   3'- -GCGGUACGuugUCCGCCAcUCCUUcc -5'
14228 5' -55.3 NC_003521.1 + 32736 0.67 0.955986
Target:  5'- aCGCCAc-CAGCGGGCGcG-GAGGAAc- -3'
miRNA:   3'- -GCGGUacGUUGUCCGC-CaCUCCUUcc -5'
14228 5' -55.3 NC_003521.1 + 86961 0.67 0.955986
Target:  5'- -aCCAgGCu---GGCGGUGAGGggGu -3'
miRNA:   3'- gcGGUaCGuuguCCGCCACUCCuuCc -5'
14228 5' -55.3 NC_003521.1 + 208455 0.67 0.955613
Target:  5'- cCGCCguagauaGUGCAGCuGaCGGUGuGGGAGa -3'
miRNA:   3'- -GCGG-------UACGUUGuCcGCCACuCCUUCc -5'
14228 5' -55.3 NC_003521.1 + 153108 0.67 0.950964
Target:  5'- cCGCCGggcgcgcgcgacgGCAGCAGGCGGcuuugguccaccagcGAGGGcgucAGGu -3'
miRNA:   3'- -GCGGUa------------CGUUGUCCGCCa--------------CUCCU----UCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.