miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1423 3' -53.8 NC_001335.1 + 15283 0.66 0.757655
Target:  5'- cCGUAUCCGCGCaGAgcugUAUGCaGCGGUa -3'
miRNA:   3'- -GUAUGGGCGCGaCU----GUACGcUGCUAc -5'
1423 3' -53.8 NC_001335.1 + 4624 0.67 0.736518
Target:  5'- --gGCCCGCGCUc----GCGACGGUc -3'
miRNA:   3'- guaUGGGCGCGAcuguaCGCUGCUAc -5'
1423 3' -53.8 NC_001335.1 + 4083 0.67 0.72578
Target:  5'- --gACCgGCGa-GGCAgccgGCGGCGAUGc -3'
miRNA:   3'- guaUGGgCGCgaCUGUa---CGCUGCUAC- -5'
1423 3' -53.8 NC_001335.1 + 16268 0.67 0.714947
Target:  5'- gCGUAgUCGCGCUcGGCAUG-GACGGc- -3'
miRNA:   3'- -GUAUgGGCGCGA-CUGUACgCUGCUac -5'
1423 3' -53.8 NC_001335.1 + 46355 0.67 0.713858
Target:  5'- cUAUGCCCacggucaGCGC-GACGgccgcaacGCGGCGAUGa -3'
miRNA:   3'- -GUAUGGG-------CGCGaCUGUa-------CGCUGCUAC- -5'
1423 3' -53.8 NC_001335.1 + 1891 0.68 0.626219
Target:  5'- --gACCCGCGaaGAgaaCAUGCaGGCGGUGu -3'
miRNA:   3'- guaUGGGCGCgaCU---GUACG-CUGCUAC- -5'
1423 3' -53.8 NC_001335.1 + 8966 0.69 0.592735
Target:  5'- ---uUCCGCGCUGACG-GUGAUGGg- -3'
miRNA:   3'- guauGGGCGCGACUGUaCGCUGCUac -5'
1423 3' -53.8 NC_001335.1 + 32693 0.7 0.537728
Target:  5'- --gAUCCGCGCcGGCcaacggcgGCGGCGGUGg -3'
miRNA:   3'- guaUGGGCGCGaCUGua------CGCUGCUAC- -5'
1423 3' -53.8 NC_001335.1 + 7154 0.7 0.526922
Target:  5'- gGU-CCUG-GCUGACGgccGCGACGGUGa -3'
miRNA:   3'- gUAuGGGCgCGACUGUa--CGCUGCUAC- -5'
1423 3' -53.8 NC_001335.1 + 52257 0.7 0.516198
Target:  5'- -cUACCCcuuCUGACcUGCGACGAUGa -3'
miRNA:   3'- guAUGGGcgcGACUGuACGCUGCUAC- -5'
1423 3' -53.8 NC_001335.1 + 5706 0.73 0.36006
Target:  5'- aCGUGCCguccuUGCGCUGGC-UGCGuACGGUGc -3'
miRNA:   3'- -GUAUGG-----GCGCGACUGuACGC-UGCUAC- -5'
1423 3' -53.8 NC_001335.1 + 52160 1.07 0.001658
Target:  5'- cCAUACCCGCGCUGACAUGCGACGAUGc -3'
miRNA:   3'- -GUAUGGGCGCGACUGUACGCUGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.