miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1423 5' -52.9 NC_001335.1 + 46355 0.66 0.808877
Target:  5'- cGCCU-GGCGCAgAGCcAGCGCAg-- -3'
miRNA:   3'- cCGGAgCUGUGUgUCGuUUGCGUguu -5'
1423 5' -52.9 NC_001335.1 + 2451 0.66 0.798994
Target:  5'- gGGCCgcaaccgaugUCGAC-CACAuCAAGCGCGgGAa -3'
miRNA:   3'- -CCGG----------AGCUGuGUGUcGUUUGCGUgUU- -5'
1423 5' -52.9 NC_001335.1 + 1454 0.66 0.768274
Target:  5'- uGGCCUCG-CGCuucucauCGGUggGCGCGu-- -3'
miRNA:   3'- -CCGGAGCuGUGu------GUCGuuUGCGUguu -5'
1423 5' -52.9 NC_001335.1 + 44767 0.66 0.768274
Target:  5'- uGGCgugaCUCGACAaGCGGUGucGugGCACAAg -3'
miRNA:   3'- -CCG----GAGCUGUgUGUCGU--UugCGUGUU- -5'
1423 5' -52.9 NC_001335.1 + 7142 0.66 0.768274
Target:  5'- cGGCCgCGACggugauccACGCGGCuGAACGCGg-- -3'
miRNA:   3'- -CCGGaGCUG--------UGUGUCG-UUUGCGUguu -5'
1423 5' -52.9 NC_001335.1 + 4972 0.67 0.757718
Target:  5'- aGGCgUCGACugggagucCACGGCAAcCGCAa-- -3'
miRNA:   3'- -CCGgAGCUGu-------GUGUCGUUuGCGUguu -5'
1423 5' -52.9 NC_001335.1 + 38777 0.67 0.757718
Target:  5'- aGCCUCGACugG-AGC-GAUGCGCu- -3'
miRNA:   3'- cCGGAGCUGugUgUCGuUUGCGUGuu -5'
1423 5' -52.9 NC_001335.1 + 13073 0.67 0.747024
Target:  5'- aGCUUCGugAuCGCAGuCAAACGCGu-- -3'
miRNA:   3'- cCGGAGCugU-GUGUC-GUUUGCGUguu -5'
1423 5' -52.9 NC_001335.1 + 5531 0.67 0.736206
Target:  5'- cGGgCUCGACGCugAGUcgGCgGCugAc -3'
miRNA:   3'- -CCgGAGCUGUGugUCGuuUG-CGugUu -5'
1423 5' -52.9 NC_001335.1 + 1351 0.67 0.714246
Target:  5'- cGCCaUCGACGCccagaaACAGCAcGCGCcCAc -3'
miRNA:   3'- cCGG-AGCUGUG------UGUCGUuUGCGuGUu -5'
1423 5' -52.9 NC_001335.1 + 15296 0.68 0.70313
Target:  5'- gGGCUUCGugGCGauCAGCcgGAACGCcuugGCGAu -3'
miRNA:   3'- -CCGGAGCugUGU--GUCG--UUUGCG----UGUU- -5'
1423 5' -52.9 NC_001335.1 + 5608 0.68 0.70313
Target:  5'- cGGCCguagCGGCaggcaccguACGCAGCcAGCGCAa-- -3'
miRNA:   3'- -CCGGa---GCUG---------UGUGUCGuUUGCGUguu -5'
1423 5' -52.9 NC_001335.1 + 34832 0.68 0.656913
Target:  5'- gGGCCUCGggggucaagaACGCGCAGCAccucuucAACuGCugGGu -3'
miRNA:   3'- -CCGGAGC----------UGUGUGUCGU-------UUG-CGugUU- -5'
1423 5' -52.9 NC_001335.1 + 13904 0.69 0.61255
Target:  5'- uGCCUgGACGCGaGGCAuuCGCGCc- -3'
miRNA:   3'- cCGGAgCUGUGUgUCGUuuGCGUGuu -5'
1423 5' -52.9 NC_001335.1 + 48350 0.7 0.55615
Target:  5'- cGGCCgCGACAaggUACGGCGcgAGCGcCGCAAg -3'
miRNA:   3'- -CCGGaGCUGU---GUGUCGU--UUGC-GUGUU- -5'
1423 5' -52.9 NC_001335.1 + 1711 0.71 0.512133
Target:  5'- cGGCCUCGGCAUguACGGCG---GCACc- -3'
miRNA:   3'- -CCGGAGCUGUG--UGUCGUuugCGUGuu -5'
1423 5' -52.9 NC_001335.1 + 33013 0.71 0.490664
Target:  5'- cGGCUUUGGC-CGCAGCAGAuuCGUACu- -3'
miRNA:   3'- -CCGGAGCUGuGUGUCGUUU--GCGUGuu -5'
1423 5' -52.9 NC_001335.1 + 16305 0.72 0.459275
Target:  5'- cGCCUCGACGC-UGGCcccGACGCugGAg -3'
miRNA:   3'- cCGGAGCUGUGuGUCGu--UUGCGugUU- -5'
1423 5' -52.9 NC_001335.1 + 49648 0.72 0.44905
Target:  5'- cGGCCgUUGACGCACAgaccGCAAcGgGCACAAg -3'
miRNA:   3'- -CCGG-AGCUGUGUGU----CGUU-UgCGUGUU- -5'
1423 5' -52.9 NC_001335.1 + 52198 0.74 0.354337
Target:  5'- cGCCgCGGCACGCGGCuagcaAAGCGUGCGAu -3'
miRNA:   3'- cCGGaGCUGUGUGUCG-----UUUGCGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.