miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14231 3' -60.1 NC_003521.1 + 98853 0.66 0.844226
Target:  5'- cGCuGCAGCuccuGACGCUCgUCGCCcagcagGUGGGc -3'
miRNA:   3'- -CGuCGUCGu---CUGCGGG-GGCGG------UACUC- -5'
14231 3' -60.1 NC_003521.1 + 131320 0.66 0.844226
Target:  5'- aGCAGCGGCcGGCGCgaccaCUCGCUG-GAGc -3'
miRNA:   3'- -CGUCGUCGuCUGCGg----GGGCGGUaCUC- -5'
14231 3' -60.1 NC_003521.1 + 214573 0.66 0.844226
Target:  5'- uGCAGCAGCGcuGGCGUUCCgugCGCgAcGAGg -3'
miRNA:   3'- -CGUCGUCGU--CUGCGGGG---GCGgUaCUC- -5'
14231 3' -60.1 NC_003521.1 + 150709 0.66 0.844226
Target:  5'- cCGGCGGC-GACugGCUCUCGgCCGUGGGc -3'
miRNA:   3'- cGUCGUCGuCUG--CGGGGGC-GGUACUC- -5'
14231 3' -60.1 NC_003521.1 + 187389 0.66 0.844226
Target:  5'- aGCAGCGGCAacaGCCUCCGCa----- -3'
miRNA:   3'- -CGUCGUCGUcugCGGGGGCGguacuc -5'
14231 3' -60.1 NC_003521.1 + 32155 0.66 0.844226
Target:  5'- aGCGGCGGaAGGCGCCCgCGUUGUu-- -3'
miRNA:   3'- -CGUCGUCgUCUGCGGGgGCGGUAcuc -5'
14231 3' -60.1 NC_003521.1 + 140182 0.66 0.839596
Target:  5'- cGCAacGCGGCgGGACGgccgguuuucgagguCCCCCGgCCAaGAGa -3'
miRNA:   3'- -CGU--CGUCG-UCUGC---------------GGGGGC-GGUaCUC- -5'
14231 3' -60.1 NC_003521.1 + 13460 0.66 0.836475
Target:  5'- cGCAGCGGCGGuaGCGCCgUCGaCGgucUGGGc -3'
miRNA:   3'- -CGUCGUCGUC--UGCGGgGGCgGU---ACUC- -5'
14231 3' -60.1 NC_003521.1 + 135261 0.66 0.836475
Target:  5'- aCGGCGGCGGACGCCgaCGaCGagGAGg -3'
miRNA:   3'- cGUCGUCGUCUGCGGggGCgGUa-CUC- -5'
14231 3' -60.1 NC_003521.1 + 98546 0.66 0.836475
Target:  5'- aGCGGCGGCGGGucccaGCCCgaGCCc-GAGu -3'
miRNA:   3'- -CGUCGUCGUCUg----CGGGggCGGuaCUC- -5'
14231 3' -60.1 NC_003521.1 + 134820 0.66 0.836475
Target:  5'- -uGGCAGCucauGAacgUGCCCCCGCCc---- -3'
miRNA:   3'- cgUCGUCGu---CU---GCGGGGGCGGuacuc -5'
14231 3' -60.1 NC_003521.1 + 219786 0.66 0.836475
Target:  5'- uGCGaCAGCGGugGaUCUCGCCGUGGc -3'
miRNA:   3'- -CGUcGUCGUCugCgGGGGCGGUACUc -5'
14231 3' -60.1 NC_003521.1 + 62569 0.66 0.828555
Target:  5'- cGCAauGCAGCA-ACGCCgCCGCCuaccagugcGAGa -3'
miRNA:   3'- -CGU--CGUCGUcUGCGGgGGCGGua-------CUC- -5'
14231 3' -60.1 NC_003521.1 + 153726 0.66 0.828555
Target:  5'- cCAGCGGCAcGAUGCCCa--CCGUGGc -3'
miRNA:   3'- cGUCGUCGU-CUGCGGGggcGGUACUc -5'
14231 3' -60.1 NC_003521.1 + 141301 0.66 0.828555
Target:  5'- uGCAGguGCGGgcgGCGCCCCggaGCCc---- -3'
miRNA:   3'- -CGUCguCGUC---UGCGGGGg--CGGuacuc -5'
14231 3' -60.1 NC_003521.1 + 102356 0.66 0.828555
Target:  5'- gGUGGCGGCAGGCGCUCuuGaagaaguaCAcGGGg -3'
miRNA:   3'- -CGUCGUCGUCUGCGGGggCg-------GUaCUC- -5'
14231 3' -60.1 NC_003521.1 + 42015 0.66 0.828555
Target:  5'- gGCGGCAcGaCAGACGCCgCCGgCAc--- -3'
miRNA:   3'- -CGUCGU-C-GUCUGCGGgGGCgGUacuc -5'
14231 3' -60.1 NC_003521.1 + 198209 0.66 0.828555
Target:  5'- -uGGCGGCGacGGCGCCgCCggcgGCCGUGGu -3'
miRNA:   3'- cgUCGUCGU--CUGCGGgGG----CGGUACUc -5'
14231 3' -60.1 NC_003521.1 + 126574 0.66 0.828555
Target:  5'- -gGGCAGCGGgaaGCCgCCGUCGUGc- -3'
miRNA:   3'- cgUCGUCGUCug-CGGgGGCGGUACuc -5'
14231 3' -60.1 NC_003521.1 + 75785 0.66 0.820475
Target:  5'- cCAGguGCAGACGCCgCgGCagcaccaugcUGAGg -3'
miRNA:   3'- cGUCguCGUCUGCGGgGgCGgu--------ACUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.