miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14231 5' -55.7 NC_003521.1 + 154632 0.66 0.965802
Target:  5'- uUUUCGGCUUCgucagcaaGCACGUG-CCGCUg-- -3'
miRNA:   3'- -AAGGCUGAAG--------CGUGCGCaGGCGAagu -5'
14231 5' -55.7 NC_003521.1 + 135851 0.66 0.965802
Target:  5'- cUCCGACgucUCGCgGCGCccCCGCggCAc -3'
miRNA:   3'- aAGGCUGa--AGCG-UGCGcaGGCGaaGU- -5'
14231 5' -55.7 NC_003521.1 + 85681 0.66 0.965802
Target:  5'- -gCCGGCguccaGCACGCG-CCGCa--- -3'
miRNA:   3'- aaGGCUGaag--CGUGCGCaGGCGaagu -5'
14231 5' -55.7 NC_003521.1 + 170844 0.66 0.962557
Target:  5'- --aCGACga-GaCGCGCGUCgGCUUCu -3'
miRNA:   3'- aagGCUGaagC-GUGCGCAGgCGAAGu -5'
14231 5' -55.7 NC_003521.1 + 129730 0.66 0.962557
Target:  5'- -cCCGuCgaCGCgaGCGCGUCCGCgccgUCu -3'
miRNA:   3'- aaGGCuGaaGCG--UGCGCAGGCGa---AGu -5'
14231 5' -55.7 NC_003521.1 + 238867 0.66 0.959104
Target:  5'- -gCCGGCUgggugUCcCGCGgGUCCGUUUCc -3'
miRNA:   3'- aaGGCUGA-----AGcGUGCgCAGGCGAAGu -5'
14231 5' -55.7 NC_003521.1 + 38640 0.66 0.959104
Target:  5'- -gCCGGCUgggugUCcCGCGgGUCCGUUUCc -3'
miRNA:   3'- aaGGCUGA-----AGcGUGCgCAGGCGAAGu -5'
14231 5' -55.7 NC_003521.1 + 97295 0.66 0.955439
Target:  5'- -gCCGGCg--GCGCGCGUgCGgaUCAg -3'
miRNA:   3'- aaGGCUGaagCGUGCGCAgGCgaAGU- -5'
14231 5' -55.7 NC_003521.1 + 128599 0.66 0.95506
Target:  5'- --aCGACcUCGCACugcugauugagcaGCGccUCCGCUUCGg -3'
miRNA:   3'- aagGCUGaAGCGUG-------------CGC--AGGCGAAGU- -5'
14231 5' -55.7 NC_003521.1 + 42801 0.66 0.947453
Target:  5'- -cCCGGCggcUGCACGCG-CCGCa--- -3'
miRNA:   3'- aaGGCUGaa-GCGUGCGCaGGCGaagu -5'
14231 5' -55.7 NC_003521.1 + 59307 0.67 0.943128
Target:  5'- cUUCGGCUUCGUACGCaaccacaCCGuCUUCu -3'
miRNA:   3'- aAGGCUGAAGCGUGCGca-----GGC-GAAGu -5'
14231 5' -55.7 NC_003521.1 + 122644 0.67 0.92879
Target:  5'- -cCCGACUUUGCcggcggGCGuCGUCUGCggCGg -3'
miRNA:   3'- aaGGCUGAAGCG------UGC-GCAGGCGaaGU- -5'
14231 5' -55.7 NC_003521.1 + 49742 0.68 0.91809
Target:  5'- gUgCGGCagUCGUACGCc-CCGCUUCAu -3'
miRNA:   3'- aAgGCUGa-AGCGUGCGcaGGCGAAGU- -5'
14231 5' -55.7 NC_003521.1 + 157157 0.68 0.906478
Target:  5'- uUUCCGuuuCUUCGUcCGUGUCCGUgccgCAc -3'
miRNA:   3'- -AAGGCu--GAAGCGuGCGCAGGCGaa--GU- -5'
14231 5' -55.7 NC_003521.1 + 72464 0.68 0.906478
Target:  5'- -gCCGACUgcCGCuACGCG-CCGCUcuUCGc -3'
miRNA:   3'- aaGGCUGAa-GCG-UGCGCaGGCGA--AGU- -5'
14231 5' -55.7 NC_003521.1 + 105089 0.68 0.900333
Target:  5'- gUCCGGgUggUUGCACGCGUCCaCgaugUCAu -3'
miRNA:   3'- aAGGCUgA--AGCGUGCGCAGGcGa---AGU- -5'
14231 5' -55.7 NC_003521.1 + 98515 0.68 0.900333
Target:  5'- gUUgCGACgaCGCGCGCGgcugggCCGCUgCAg -3'
miRNA:   3'- -AAgGCUGaaGCGUGCGCa-----GGCGAaGU- -5'
14231 5' -55.7 NC_003521.1 + 137974 0.68 0.887381
Target:  5'- -gCCGACguggUGCGCuGUGUCCGCgcgCAg -3'
miRNA:   3'- aaGGCUGaa--GCGUG-CGCAGGCGaa-GU- -5'
14231 5' -55.7 NC_003521.1 + 184017 0.68 0.887381
Target:  5'- -gCCGACUcguUCGCGCGCGacgCCGgUUgGg -3'
miRNA:   3'- aaGGCUGA---AGCGUGCGCa--GGCgAAgU- -5'
14231 5' -55.7 NC_003521.1 + 183624 0.69 0.866346
Target:  5'- cUCCGAgUUUGCGaugacucccUGCG-CCGCUUCGu -3'
miRNA:   3'- aAGGCUgAAGCGU---------GCGCaGGCGAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.