miRNA display CGI


Results 21 - 40 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14233 5' -52.1 NC_003521.1 + 55072 0.66 0.997446
Target:  5'- gCCCCuaggcGCUCCGGCGCAcccGCUCGGcGAu -3'
miRNA:   3'- -GGGGu----UGGGGUUGUGUuu-UGGGCU-CU- -5'
14233 5' -52.1 NC_003521.1 + 140244 0.66 0.997404
Target:  5'- uCCaCCGGCCCCuACGgCGguaagucGGACgCCGAGGg -3'
miRNA:   3'- -GG-GGUUGGGGuUGU-GU-------UUUG-GGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 181164 0.66 0.997184
Target:  5'- uCUCCGuCUCCAgauagagggcgaagcGCACGAAguccACCCGGGGc -3'
miRNA:   3'- -GGGGUuGGGGU---------------UGUGUUU----UGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 164938 0.66 0.996997
Target:  5'- gCCCCucCUCCGGCggcucGCGucGCCgGAGAg -3'
miRNA:   3'- -GGGGuuGGGGUUG-----UGUuuUGGgCUCU- -5'
14233 5' -52.1 NC_003521.1 + 36464 0.66 0.996997
Target:  5'- uCCUgGGCCgCGACGaAGGACCgGAGGa -3'
miRNA:   3'- -GGGgUUGGgGUUGUgUUUUGGgCUCU- -5'
14233 5' -52.1 NC_003521.1 + 196186 0.66 0.996997
Target:  5'- uCUCCAACaCCCAcagGCGCAucaucugcAGCUCGAGc -3'
miRNA:   3'- -GGGGUUG-GGGU---UGUGUu-------UUGGGCUCu -5'
14233 5' -52.1 NC_003521.1 + 62950 0.66 0.996997
Target:  5'- aCCCaaaaaGACUCCGgagaagcgGCGCAagGAACCCGGcGAg -3'
miRNA:   3'- -GGGg----UUGGGGU--------UGUGU--UUUGGGCU-CU- -5'
14233 5' -52.1 NC_003521.1 + 205460 0.66 0.996997
Target:  5'- aUCCAACCCCccagucaaGACACAGAcACCaGGGu -3'
miRNA:   3'- gGGGUUGGGG--------UUGUGUUU-UGGgCUCu -5'
14233 5' -52.1 NC_003521.1 + 135838 0.66 0.996997
Target:  5'- cUCCCGugCCCAu----GAGCaCCGGGAa -3'
miRNA:   3'- -GGGGUugGGGUuguguUUUG-GGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 18905 0.66 0.996997
Target:  5'- -aUCuuCCCCucGCACGccuGGCCCGAGGu -3'
miRNA:   3'- ggGGuuGGGGu-UGUGUu--UUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 61089 0.66 0.996997
Target:  5'- aCCCGucACCCU--CAaGGAACCCGAGu -3'
miRNA:   3'- gGGGU--UGGGGuuGUgUUUUGGGCUCu -5'
14233 5' -52.1 NC_003521.1 + 99801 0.66 0.996949
Target:  5'- gCCCCAGCCCUccugguggucgagGAUGCA--GCCC-AGGu -3'
miRNA:   3'- -GGGGUUGGGG-------------UUGUGUuuUGGGcUCU- -5'
14233 5' -52.1 NC_003521.1 + 22591 0.66 0.996949
Target:  5'- aCCCGugacgGCCCCuGCGgucgccugaccucCGuuGCCCGGGAc -3'
miRNA:   3'- gGGGU-----UGGGGuUGU-------------GUuuUGGGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 108405 0.66 0.996485
Target:  5'- aCCCGACCCCGugucuugccauuGCAgGGAcCCCGc-- -3'
miRNA:   3'- gGGGUUGGGGU------------UGUgUUUuGGGCucu -5'
14233 5' -52.1 NC_003521.1 + 110647 0.66 0.996485
Target:  5'- gCCgGGCgCCGGCACGGucacGGCCCGGu- -3'
miRNA:   3'- gGGgUUGgGGUUGUGUU----UUGGGCUcu -5'
14233 5' -52.1 NC_003521.1 + 140996 0.66 0.996485
Target:  5'- gCCCu-CUCCAGCaACAAGGCCCa--- -3'
miRNA:   3'- gGGGuuGGGGUUG-UGUUUUGGGcucu -5'
14233 5' -52.1 NC_003521.1 + 26234 0.66 0.996485
Target:  5'- uUCCAGCCCCucgucgcGCACGGAACgCCa--- -3'
miRNA:   3'- gGGGUUGGGGu------UGUGUUUUG-GGcucu -5'
14233 5' -52.1 NC_003521.1 + 62863 0.66 0.996485
Target:  5'- gCCCC-GCCUCAGCAUcccuCCCGGu- -3'
miRNA:   3'- -GGGGuUGGGGUUGUGuuuuGGGCUcu -5'
14233 5' -52.1 NC_003521.1 + 135412 0.66 0.996485
Target:  5'- gCCCCAuCCCCAuCGCcgucacGCgCGGGAc -3'
miRNA:   3'- -GGGGUuGGGGUuGUGuuu---UGgGCUCU- -5'
14233 5' -52.1 NC_003521.1 + 45499 0.66 0.996485
Target:  5'- gCUCCGACCUCuguuGCGCuccg-CCGAGAg -3'
miRNA:   3'- -GGGGUUGGGGu---UGUGuuuugGGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.