miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 3' -57.8 NC_003521.1 + 98234 0.66 0.913617
Target:  5'- gGAGgcgGGGAGGCGggGGCGgccaCGGCGg -3'
miRNA:   3'- -UUCacaCUCUCUGCgaUCGCg---GCCGC- -5'
14235 3' -57.8 NC_003521.1 + 137470 0.66 0.913617
Target:  5'- -----cGAcGAGugGaagGGCGCCGGCGu -3'
miRNA:   3'- uucacaCU-CUCugCga-UCGCGGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 148408 0.66 0.913045
Target:  5'- -cGUGcGAGGGAgccauggUGCgggcggccGCGCCGGCGg -3'
miRNA:   3'- uuCACaCUCUCU-------GCGau------CGCGGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 18716 0.66 0.9078
Target:  5'- cGGcUGUGGcuGcCGCUGGCGgCGGCGa -3'
miRNA:   3'- uUC-ACACUcuCuGCGAUCGCgGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 92230 0.66 0.9078
Target:  5'- --cUGUGAGGGccCGacgGGCGCCGcGCGg -3'
miRNA:   3'- uucACACUCUCu-GCga-UCGCGGC-CGC- -5'
14235 3' -57.8 NC_003521.1 + 46036 0.66 0.9078
Target:  5'- gAGGaGUGAGGGGCGCcauGaCGuuGGCa -3'
miRNA:   3'- -UUCaCACUCUCUGCGau-C-GCggCCGc -5'
14235 3' -57.8 NC_003521.1 + 198785 0.66 0.9078
Target:  5'- cGAG-GUGGGuAGcaGCuGCgUGGUGCCGGCGg -3'
miRNA:   3'- -UUCaCACUC-UC--UG-CG-AUCGCGGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 48714 0.66 0.9078
Target:  5'- cGAGgccGGGAGAgGUggAGaCGCCGGCGa -3'
miRNA:   3'- -UUCacaCUCUCUgCGa-UC-GCGGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 236448 0.66 0.904204
Target:  5'- uGAGUGagcGAGcgGGACGCgGGCcgcgaugagcgaaccGCCGGCGg -3'
miRNA:   3'- -UUCACa--CUC--UCUGCGaUCG---------------CGGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 4125 0.66 0.901762
Target:  5'- uAGG-GUGGGAuACGggAGCggGCCGGCGg -3'
miRNA:   3'- -UUCaCACUCUcUGCgaUCG--CGGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 31002 0.66 0.895505
Target:  5'- ----aUGGGGcGACGacGGCGCCGGCGa -3'
miRNA:   3'- uucacACUCU-CUGCgaUCGCGGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 78135 0.66 0.889033
Target:  5'- ---gGUGGGc-GCGUUAGCGgCGGCGg -3'
miRNA:   3'- uucaCACUCucUGCGAUCGCgGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 18173 0.66 0.889033
Target:  5'- cAGcGUG-GAGGCGCUGcGCGCCuGCc -3'
miRNA:   3'- uUCaCACuCUCUGCGAU-CGCGGcCGc -5'
14235 3' -57.8 NC_003521.1 + 175410 0.66 0.889033
Target:  5'- cAGGUGggucaGGGAGGCGCgcgucugagUGGCGUgcuCGGCGu -3'
miRNA:   3'- -UUCACa----CUCUCUGCG---------AUCGCG---GCCGC- -5'
14235 3' -57.8 NC_003521.1 + 185101 0.66 0.889033
Target:  5'- ----cUGGGAGGCGCUGcGCGCCGaCa -3'
miRNA:   3'- uucacACUCUCUGCGAU-CGCGGCcGc -5'
14235 3' -57.8 NC_003521.1 + 22169 0.66 0.882347
Target:  5'- cGGUGgaGAGGGACGa-GGCGCCGcCGg -3'
miRNA:   3'- uUCACa-CUCUCUGCgaUCGCGGCcGC- -5'
14235 3' -57.8 NC_003521.1 + 384 0.67 0.868355
Target:  5'- gAAG-GUGAGuGuguGCUGGCGCgCGGCu -3'
miRNA:   3'- -UUCaCACUCuCug-CGAUCGCG-GCCGc -5'
14235 3' -57.8 NC_003521.1 + 40706 0.67 0.868355
Target:  5'- gAAG-GUGAGuGuguGCUGGCGCgCGGCu -3'
miRNA:   3'- -UUCaCACUCuCug-CGAUCGCG-GCCGc -5'
14235 3' -57.8 NC_003521.1 + 84593 0.67 0.868355
Target:  5'- cGGUGUGGucGACcaGCUcGGCGUCGGUGa -3'
miRNA:   3'- uUCACACUcuCUG--CGA-UCGCGGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 100307 0.67 0.863999
Target:  5'- aGAGUGacgucgagaccccgcUGAGuGACGCgGGCGCCuuccucaaccgcGGCGa -3'
miRNA:   3'- -UUCAC---------------ACUCuCUGCGaUCGCGG------------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.