miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 3' -57.8 NC_003521.1 + 155250 0.69 0.750922
Target:  5'- uGGUgGUGGGGGGCGgcGGCGgCGGCGc -3'
miRNA:   3'- uUCA-CACUCUCUGCgaUCGCgGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 155475 0.7 0.683634
Target:  5'- gGGGUGaGAGAGACGCcGGCcugCGGCGg -3'
miRNA:   3'- -UUCACaCUCUCUGCGaUCGcg-GCCGC- -5'
14235 3' -57.8 NC_003521.1 + 165259 0.67 0.845884
Target:  5'- cGAGgacagGAG-GGCGCUGGCguagccgccGCCGGCGc -3'
miRNA:   3'- -UUCaca--CUCuCUGCGAUCG---------CGGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 168456 0.69 0.769389
Target:  5'- aGAGcGUGAuGGGGCGCUGGUGgCUGGUc -3'
miRNA:   3'- -UUCaCACU-CUCUGCGAUCGC-GGCCGc -5'
14235 3' -57.8 NC_003521.1 + 175410 0.66 0.889033
Target:  5'- cAGGUGggucaGGGAGGCGCgcgucugagUGGCGUgcuCGGCGu -3'
miRNA:   3'- -UUCACa----CUCUCUGCG---------AUCGCG---GCCGC- -5'
14235 3' -57.8 NC_003521.1 + 185101 0.66 0.889033
Target:  5'- ----cUGGGAGGCGCUGcGCGCCGaCa -3'
miRNA:   3'- uucacACUCUCUGCGAU-CGCGGCcGc -5'
14235 3' -57.8 NC_003521.1 + 197257 0.71 0.624281
Target:  5'- gGAGcgGUGcuuGACGC-GGCGCCGGCGg -3'
miRNA:   3'- -UUCa-CACucuCUGCGaUCGCGGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 198785 0.66 0.9078
Target:  5'- cGAG-GUGGGuAGcaGCuGCgUGGUGCCGGCGg -3'
miRNA:   3'- -UUCaCACUC-UC--UG-CG-AUCGCGGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 213947 0.71 0.634202
Target:  5'- uAAGgc--AGAGACGCgggugGGCGCCGGCu -3'
miRNA:   3'- -UUCacacUCUCUGCGa----UCGCGGCCGc -5'
14235 3' -57.8 NC_003521.1 + 221892 0.68 0.829982
Target:  5'- -cGUGUGGGgcGGAuUGCcGGCGCgCGGCGc -3'
miRNA:   3'- uuCACACUC--UCU-GCGaUCGCG-GCCGC- -5'
14235 3' -57.8 NC_003521.1 + 224085 0.67 0.853565
Target:  5'- -----cGGcGGGCGCgcGCGCCGGCGg -3'
miRNA:   3'- uucacaCUcUCUGCGauCGCGGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 236448 0.66 0.904204
Target:  5'- uGAGUGagcGAGcgGGACGCgGGCcgcgaugagcgaaccGCCGGCGg -3'
miRNA:   3'- -UUCACa--CUC--UCUGCGaUCG---------------CGGCCGC- -5'
14235 3' -57.8 NC_003521.1 + 237787 0.71 0.624281
Target:  5'- cGGUGUaguuGAGAGACGUUuGUGgCGGCGa -3'
miRNA:   3'- uUCACA----CUCUCUGCGAuCGCgGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.