miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 136057 0.67 0.793038
Target:  5'- cGAC-CUGGGCAgCGGC-UGCGCGCu- -3'
miRNA:   3'- -CUGcGGCUCGUgGUCGuACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 62222 0.67 0.793038
Target:  5'- gGACGCCGuGCugCAGgAggGCGCcCGg -3'
miRNA:   3'- -CUGCGGCuCGugGUCgUa-CGCGuGUu -5'
14235 5' -58.3 NC_003521.1 + 124652 0.67 0.835507
Target:  5'- --gGCCacagGAGCAgCAGCAggUGCGCACc- -3'
miRNA:   3'- cugCGG----CUCGUgGUCGU--ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 112993 0.67 0.79215
Target:  5'- uGGCGCCGGGgcccuucCACgAGC-UGCGCGCc- -3'
miRNA:   3'- -CUGCGGCUC-------GUGgUCGuACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 76399 0.67 0.801841
Target:  5'- uGGCGCUGcuAGCACCAGCGgcgguguggugGUGCugGc -3'
miRNA:   3'- -CUGCGGC--UCGUGGUCGUa----------CGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 185106 0.67 0.801841
Target:  5'- aGGCGCUGcGCGCCGaCAUGCuggaGCACGGg -3'
miRNA:   3'- -CUGCGGCuCGUGGUcGUACG----CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 53947 0.67 0.810498
Target:  5'- aGACGCUGAGCuggGCCgacgAGcCGUGCuGCACGc -3'
miRNA:   3'- -CUGCGGCUCG---UGG----UC-GUACG-CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 70909 0.67 0.801841
Target:  5'- aGCGCCGucagagccgucAGCGCCAGCAggGUcCACAGc -3'
miRNA:   3'- cUGCGGC-----------UCGUGGUCGUa-CGcGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 126787 0.67 0.801841
Target:  5'- uGGCGCUGcGCGugguCCAGCuccGCGCGCAc -3'
miRNA:   3'- -CUGCGGCuCGU----GGUCGua-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 212717 0.67 0.801841
Target:  5'- -cCGCCaGGGUACCAGCAUGCa----- -3'
miRNA:   3'- cuGCGG-CUCGUGGUCGUACGcguguu -5'
14235 5' -58.3 NC_003521.1 + 125968 0.67 0.835507
Target:  5'- gGGCGUC-AGCACCAGUu--CGCACAc -3'
miRNA:   3'- -CUGCGGcUCGUGGUCGuacGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 90060 0.67 0.835507
Target:  5'- -uCGCgCGAGCGCaCAcGCGggcggGCGCGCAc -3'
miRNA:   3'- cuGCG-GCUCGUG-GU-CGUa----CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 203079 0.67 0.835507
Target:  5'- --aGCCGGGgACCAGC---CGCACAGa -3'
miRNA:   3'- cugCGGCUCgUGGUCGuacGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 181330 0.67 0.827338
Target:  5'- gGGCGCCGucugguucuguAGCugCAGCGUGauuguCGCGCc- -3'
miRNA:   3'- -CUGCGGC-----------UCGugGUCGUAC-----GCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 147707 0.67 0.827338
Target:  5'- --gGCC-AGCACCAuGUgacccGUGCGCACGAa -3'
miRNA:   3'- cugCGGcUCGUGGU-CG-----UACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 95089 0.67 0.827338
Target:  5'- aGGgGCuCGGGCGCCuugAGCGgccGCGCGCGc -3'
miRNA:   3'- -CUgCG-GCUCGUGG---UCGUa--CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 31366 0.67 0.810498
Target:  5'- --aGCCGcuGCACgucgccggaCAGCAUGCGUACAc -3'
miRNA:   3'- cugCGGCu-CGUG---------GUCGUACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 224863 0.67 0.807917
Target:  5'- --gGCCGuagcGCGCCAGCucguccaggugcuugGCGCACAGc -3'
miRNA:   3'- cugCGGCu---CGUGGUCGua-------------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 203857 0.67 0.801841
Target:  5'- -cCGCCGAGCACCcGCuccgcUGCG-ACGAc -3'
miRNA:   3'- cuGCGGCUCGUGGuCGu----ACGCgUGUU- -5'
14235 5' -58.3 NC_003521.1 + 224551 0.67 0.801841
Target:  5'- cGGCGCCcAGCaggaACCAGCG-GCaGCGCAGc -3'
miRNA:   3'- -CUGCGGcUCG----UGGUCGUaCG-CGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.