miRNA display CGI


Results 101 - 120 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 203857 0.67 0.801841
Target:  5'- -cCGCCGAGCACCcGCuccgcUGCG-ACGAc -3'
miRNA:   3'- cuGCGGCUCGUGGuCGu----ACGCgUGUU- -5'
14235 5' -58.3 NC_003521.1 + 222626 0.67 0.835507
Target:  5'- --gGCCGAcaugugaucgaaGgGCCGGCAgGCGCGCAGc -3'
miRNA:   3'- cugCGGCU------------CgUGGUCGUaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 125968 0.67 0.835507
Target:  5'- gGGCGUC-AGCACCAGUu--CGCACAc -3'
miRNA:   3'- -CUGCGGcUCGUGGUCGuacGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 90060 0.67 0.835507
Target:  5'- -uCGCgCGAGCGCaCAcGCGggcggGCGCGCAc -3'
miRNA:   3'- cuGCG-GCUCGUG-GU-CGUa----CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 203079 0.67 0.835507
Target:  5'- --aGCCGGGgACCAGC---CGCACAGa -3'
miRNA:   3'- cugCGGCUCgUGGUCGuacGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 181330 0.67 0.827338
Target:  5'- gGGCGCCGucugguucuguAGCugCAGCGUGauuguCGCGCc- -3'
miRNA:   3'- -CUGCGGC-----------UCGugGUCGUAC-----GCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 147707 0.67 0.827338
Target:  5'- --gGCC-AGCACCAuGUgacccGUGCGCACGAa -3'
miRNA:   3'- cugCGGcUCGUGGU-CG-----UACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 37433 0.67 0.826512
Target:  5'- cGGCGCCGAGCcucugaaggugacGCUgugGGCucGCGCGCGGg -3'
miRNA:   3'- -CUGCGGCUCG-------------UGG---UCGuaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 224319 0.67 0.822355
Target:  5'- --aGCCGAGCGCCgcagcccgugcucguAGCGUcGcCGCACGu -3'
miRNA:   3'- cugCGGCUCGUGG---------------UCGUA-C-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 102792 0.68 0.775023
Target:  5'- cACGCCccguGCGCCGGCA-GCGaCGCAc -3'
miRNA:   3'- cUGCGGcu--CGUGGUCGUaCGC-GUGUu -5'
14235 5' -58.3 NC_003521.1 + 175635 0.68 0.775023
Target:  5'- cAUGCCGGGCA-CGGCGagagcguaucguUGCGCACu- -3'
miRNA:   3'- cUGCGGCUCGUgGUCGU------------ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 119980 0.68 0.784096
Target:  5'- --gGCCGAGU-CCAGCAUG-GCACc- -3'
miRNA:   3'- cugCGGCUCGuGGUCGUACgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 117883 0.68 0.775023
Target:  5'- cGAgGCCGAGCA-CGGCcggGCGCGgAAa -3'
miRNA:   3'- -CUgCGGCUCGUgGUCGua-CGCGUgUU- -5'
14235 5' -58.3 NC_003521.1 + 123623 0.68 0.775023
Target:  5'- -cCGCCGuAGCAgCGGCGUGaugauGCGCAGc -3'
miRNA:   3'- cuGCGGC-UCGUgGUCGUACg----CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 222251 0.68 0.784096
Target:  5'- --aGUCGAGCGcgcucuCCAGC-UGCGCGCGc -3'
miRNA:   3'- cugCGGCUCGU------GGUCGuACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 138012 0.68 0.784096
Target:  5'- cGGCGUCGAgguGCGCguGCGUcgcugccgGCGCACGGg -3'
miRNA:   3'- -CUGCGGCU---CGUGguCGUA--------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 102828 0.68 0.765827
Target:  5'- cGACGCCGAGaucgACCuGCGcGCGgACAc -3'
miRNA:   3'- -CUGCGGCUCg---UGGuCGUaCGCgUGUu -5'
14235 5' -58.3 NC_003521.1 + 109875 0.68 0.765827
Target:  5'- cGGCGgCGGGgcCACCAGUAacUGCGUGCGAc -3'
miRNA:   3'- -CUGCgGCUC--GUGGUCGU--ACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 16497 0.68 0.765827
Target:  5'- cGACGCuaCGAGCACgGGC-UGCgGCGCu- -3'
miRNA:   3'- -CUGCG--GCUCGUGgUCGuACG-CGUGuu -5'
14235 5' -58.3 NC_003521.1 + 14924 0.68 0.784096
Target:  5'- cGGCGCuuCGAGCGCgAGCGgcaGCGC-CAGa -3'
miRNA:   3'- -CUGCG--GCUCGUGgUCGUa--CGCGuGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.