Results 61 - 80 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14235 | 5' | -58.3 | NC_003521.1 | + | 74118 | 0.69 | 0.727995 |
Target: 5'- cGACGCCcauGGGCGCCGuGCAggacgacgugGCGCGCc- -3' miRNA: 3'- -CUGCGG---CUCGUGGU-CGUa---------CGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 28847 | 0.69 | 0.727995 |
Target: 5'- gGACGaCGAGCugCGGCG-GCGCGgCAc -3' miRNA: 3'- -CUGCgGCUCGugGUCGUaCGCGU-GUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 121034 | 0.69 | 0.727031 |
Target: 5'- cGGCGCCGAccucgucgccgcuGCGCCGGUcccagGUGUGCugGu -3' miRNA: 3'- -CUGCGGCU-------------CGUGGUCG-----UACGCGugUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 226238 | 0.69 | 0.718317 |
Target: 5'- -gUGCCGuAGC-CCGGCGUGUGCAg-- -3' miRNA: 3'- cuGCGGC-UCGuGGUCGUACGCGUguu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 104736 | 0.69 | 0.678985 |
Target: 5'- uGACGCacacCGAGCccuCCAGCGUggagaugaGCGCGCAGc -3' miRNA: 3'- -CUGCG----GCUCGu--GGUCGUA--------CGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 48237 | 0.69 | 0.688894 |
Target: 5'- cGACGCCGAGCAgCCuGCGUuccGCGgGgGAa -3' miRNA: 3'- -CUGCGGCUCGU-GGuCGUA---CGCgUgUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 103583 | 0.69 | 0.688894 |
Target: 5'- -cCGCCGucGGCcCCGGCcgGUGCGCGGg -3' miRNA: 3'- cuGCGGC--UCGuGGUCGuaCGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 85221 | 0.68 | 0.734723 |
Target: 5'- cGGCGCC--GCGCCggacagagacauggGGCcgGCGCGCAAa -3' miRNA: 3'- -CUGCGGcuCGUGG--------------UCGuaCGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 34375 | 0.68 | 0.747104 |
Target: 5'- gGGCGuuGcGCACCAGCAgguggugGCGCuCGGg -3' miRNA: 3'- -CUGCggCuCGUGGUCGUa------CGCGuGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 142921 | 0.68 | 0.747104 |
Target: 5'- cGACGUCGGcGUugCAGCAgcgGCGguCAGg -3' miRNA: 3'- -CUGCGGCU-CGugGUCGUa--CGCguGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 111704 | 0.68 | 0.747104 |
Target: 5'- gGACGCCGAcguccaguccguGCGCCGGCAcGCcaccCACAGc -3' miRNA: 3'- -CUGCGGCU------------CGUGGUCGUaCGc---GUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 138012 | 0.68 | 0.784096 |
Target: 5'- cGGCGUCGAgguGCGCguGCGUcgcugccgGCGCACGGg -3' miRNA: 3'- -CUGCGGCU---CGUGguCGUA--------CGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 166317 | 0.68 | 0.743311 |
Target: 5'- uGAUGCCGcucuGCuCCAGCAgcugcgcgaagucGCGCACAAa -3' miRNA: 3'- -CUGCGGCu---CGuGGUCGUa------------CGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 222251 | 0.68 | 0.784096 |
Target: 5'- --aGUCGAGCGcgcucuCCAGC-UGCGCGCGc -3' miRNA: 3'- cugCGGCUCGU------GGUCGuACGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 123623 | 0.68 | 0.775023 |
Target: 5'- -cCGCCGuAGCAgCGGCGUGaugauGCGCAGc -3' miRNA: 3'- cuGCGGC-UCGUgGUCGUACg----CGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 117883 | 0.68 | 0.775023 |
Target: 5'- cGAgGCCGAGCA-CGGCcggGCGCGgAAa -3' miRNA: 3'- -CUgCGGCUCGUgGUCGua-CGCGUgUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 239789 | 0.68 | 0.774109 |
Target: 5'- cGACGCCGgccaucuGGCugCgcGGCGugaUGCGCGCGu -3' miRNA: 3'- -CUGCGGC-------UCGugG--UCGU---ACGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 233296 | 0.68 | 0.765827 |
Target: 5'- aGGCGUCGuucGCAaugccccaaaCAGCGUGCGCGCu- -3' miRNA: 3'- -CUGCGGCu--CGUg---------GUCGUACGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 186849 | 0.68 | 0.756519 |
Target: 5'- uGGCgGCCcAGCGgCGGCGUGCaGCACGg -3' miRNA: 3'- -CUG-CGGcUCGUgGUCGUACG-CGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 111931 | 0.68 | 0.736637 |
Target: 5'- cGACGCCGcccucgacuaccuGGCGCggCGGCAggaugagucuguUGCGCACAu -3' miRNA: 3'- -CUGCGGC-------------UCGUG--GUCGU------------ACGCGUGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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