Results 81 - 100 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14235 | 5' | -58.3 | NC_003521.1 | + | 163832 | 0.68 | 0.784096 |
Target: 5'- uGAUGCCGuGCcugcccaucgccGCCAGCAUcacGCGCAUc- -3' miRNA: 3'- -CUGCGGCuCG------------UGGUCGUA---CGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 16497 | 0.68 | 0.765827 |
Target: 5'- cGACGCuaCGAGCACgGGC-UGCgGCGCu- -3' miRNA: 3'- -CUGCG--GCUCGUGgUCGuACG-CGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 102828 | 0.68 | 0.765827 |
Target: 5'- cGACGCCGAGaucgACCuGCGcGCGgACAc -3' miRNA: 3'- -CUGCGGCUCg---UGGuCGUaCGCgUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 102792 | 0.68 | 0.775023 |
Target: 5'- cACGCCccguGCGCCGGCA-GCGaCGCAc -3' miRNA: 3'- cUGCGGcu--CGUGGUCGUaCGC-GUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 175635 | 0.68 | 0.775023 |
Target: 5'- cAUGCCGGGCA-CGGCGagagcguaucguUGCGCACu- -3' miRNA: 3'- cUGCGGCUCGUgGUCGU------------ACGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 181841 | 0.68 | 0.747104 |
Target: 5'- cACGCCGAcCACCAGUgccugacgGCGCGCu- -3' miRNA: 3'- cUGCGGCUcGUGGUCGua------CGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 166317 | 0.68 | 0.743311 |
Target: 5'- uGAUGCCGcucuGCuCCAGCAgcugcgcgaagucGCGCACAAa -3' miRNA: 3'- -CUGCGGCu---CGuGGUCGUa------------CGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 117883 | 0.68 | 0.775023 |
Target: 5'- cGAgGCCGAGCA-CGGCcggGCGCGgAAa -3' miRNA: 3'- -CUgCGGCUCGUgGUCGua-CGCGUgUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 39562 | 0.68 | 0.774108 |
Target: 5'- cGACGCCGgccaucuGGCugCgcGGCGugaUGCGCGCGu -3' miRNA: 3'- -CUGCGGC-------UCGugG--UCGU---ACGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 119980 | 0.68 | 0.784096 |
Target: 5'- --gGCCGAGU-CCAGCAUG-GCACc- -3' miRNA: 3'- cugCGGCUCGuGGUCGUACgCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 109875 | 0.68 | 0.765827 |
Target: 5'- cGGCGgCGGGgcCACCAGUAacUGCGUGCGAc -3' miRNA: 3'- -CUGCgGCUC--GUGGUCGU--ACGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 31366 | 0.67 | 0.810498 |
Target: 5'- --aGCCGcuGCACgucgccggaCAGCAUGCGUACAc -3' miRNA: 3'- cugCGGCu-CGUG---------GUCGUACGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 224863 | 0.67 | 0.807917 |
Target: 5'- --gGCCGuagcGCGCCAGCucguccaggugcuugGCGCACAGc -3' miRNA: 3'- cugCGGCu---CGUGGUCGua-------------CGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 203857 | 0.67 | 0.801841 |
Target: 5'- -cCGCCGAGCACCcGCuccgcUGCG-ACGAc -3' miRNA: 3'- cuGCGGCUCGUGGuCGu----ACGCgUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 212717 | 0.67 | 0.801841 |
Target: 5'- -cCGCCaGGGUACCAGCAUGCa----- -3' miRNA: 3'- cuGCGG-CUCGUGGUCGUACGcguguu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 126787 | 0.67 | 0.801841 |
Target: 5'- uGGCGCUGcGCGugguCCAGCuccGCGCGCAc -3' miRNA: 3'- -CUGCGGCuCGU----GGUCGua-CGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 224551 | 0.67 | 0.801841 |
Target: 5'- cGGCGCCcAGCaggaACCAGCG-GCaGCGCAGc -3' miRNA: 3'- -CUGCGGcUCG----UGGUCGUaCG-CGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 70909 | 0.67 | 0.801841 |
Target: 5'- aGCGCCGucagagccgucAGCGCCAGCAggGUcCACAGc -3' miRNA: 3'- cUGCGGC-----------UCGUGGUCGUa-CGcGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 70723 | 0.67 | 0.801841 |
Target: 5'- uGCGCCGGauGUACCGGCAcuucguccagcUGCaGCGCGc -3' miRNA: 3'- cUGCGGCU--CGUGGUCGU-----------ACG-CGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 239917 | 0.67 | 0.793038 |
Target: 5'- aACGCCGuGCGCCAGaugGUGCcCAu -3' miRNA: 3'- cUGCGGCuCGUGGUCguaCGCGuGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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