miRNA display CGI


Results 101 - 120 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 136057 0.67 0.793038
Target:  5'- cGAC-CUGGGCAgCGGC-UGCGCGCu- -3'
miRNA:   3'- -CUGcGGCUCGUgGUCGuACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 115368 0.67 0.793038
Target:  5'- cGCGUCGcuGGCcaggGCCGGCAUGUGCAgGg -3'
miRNA:   3'- cUGCGGC--UCG----UGGUCGUACGCGUgUu -5'
14235 5' -58.3 NC_003521.1 + 145305 0.67 0.818999
Target:  5'- -uCGCCGGGCAuCCAGUucgGCcugaaGCACGAg -3'
miRNA:   3'- cuGCGGCUCGU-GGUCGua-CG-----CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 224319 0.67 0.822355
Target:  5'- --aGCCGAGCGCCgcagcccgugcucguAGCGUcGcCGCACGu -3'
miRNA:   3'- cugCGGCUCGUGG---------------UCGUA-C-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 37433 0.67 0.826512
Target:  5'- cGGCGCCGAGCcucugaaggugacGCUgugGGCucGCGCGCGGg -3'
miRNA:   3'- -CUGCGGCUCG-------------UGG---UCGuaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 147707 0.67 0.827338
Target:  5'- --gGCC-AGCACCAuGUgacccGUGCGCACGAa -3'
miRNA:   3'- cugCGGcUCGUGGU-CG-----UACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 203079 0.67 0.835507
Target:  5'- --aGCCGGGgACCAGC---CGCACAGa -3'
miRNA:   3'- cugCGGCUCgUGGUCGuacGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 90060 0.67 0.835507
Target:  5'- -uCGCgCGAGCGCaCAcGCGggcggGCGCGCAc -3'
miRNA:   3'- cuGCG-GCUCGUG-GU-CGUa----CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 125968 0.67 0.835507
Target:  5'- gGGCGUC-AGCACCAGUu--CGCACAc -3'
miRNA:   3'- -CUGCGGcUCGUGGUCGuacGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 222626 0.67 0.835507
Target:  5'- --gGCCGAcaugugaucgaaGgGCCGGCAgGCGCGCAGc -3'
miRNA:   3'- cugCGGCU------------CgUGGUCGUaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 17041 0.67 0.810498
Target:  5'- cGACGacaaCGgcAGCACCAGCA-GCGC-CGAc -3'
miRNA:   3'- -CUGCg---GC--UCGUGGUCGUaCGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 31366 0.67 0.810498
Target:  5'- --aGCCGcuGCACgucgccggaCAGCAUGCGUACAc -3'
miRNA:   3'- cugCGGCu-CGUG---------GUCGUACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 239917 0.67 0.793038
Target:  5'- aACGCCGuGCGCCAGaugGUGCcCAu -3'
miRNA:   3'- cUGCGGCuCGUGGUCguaCGCGuGUu -5'
14235 5' -58.3 NC_003521.1 + 70723 0.67 0.801841
Target:  5'- uGCGCCGGauGUACCGGCAcuucguccagcUGCaGCGCGc -3'
miRNA:   3'- cUGCGGCU--CGUGGUCGU-----------ACG-CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 70909 0.67 0.801841
Target:  5'- aGCGCCGucagagccgucAGCGCCAGCAggGUcCACAGc -3'
miRNA:   3'- cUGCGGC-----------UCGUGGUCGUa-CGcGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 126787 0.67 0.801841
Target:  5'- uGGCGCUGcGCGugguCCAGCuccGCGCGCAc -3'
miRNA:   3'- -CUGCGGCuCGU----GGUCGua-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 212717 0.67 0.801841
Target:  5'- -cCGCCaGGGUACCAGCAUGCa----- -3'
miRNA:   3'- cuGCGG-CUCGUGGUCGUACGcguguu -5'
14235 5' -58.3 NC_003521.1 + 224551 0.67 0.801841
Target:  5'- cGGCGCCcAGCaggaACCAGCG-GCaGCGCAGc -3'
miRNA:   3'- -CUGCGGcUCG----UGGUCGUaCG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 224863 0.67 0.807917
Target:  5'- --gGCCGuagcGCGCCAGCucguccaggugcuugGCGCACAGc -3'
miRNA:   3'- cugCGGCu---CGUGGUCGua-------------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 203857 0.67 0.801841
Target:  5'- -cCGCCGAGCACCcGCuccgcUGCG-ACGAc -3'
miRNA:   3'- cuGCGGCUCGUGGuCGu----ACGCgUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.